Oncorhynchus nerka (sockeye salmon): 115141042
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Entry
115141042 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: PR domain zinc finger protein 1-like
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115141042
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
115141042
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
Zf-C2H2_ZNF451_C
zf-C2H2_6
C2CH-3rd_BIRD-IDD
zf-C2H2_jaz
zf-met
zf-C2HE
Zap1_zf1
Motif
Other DBs
NCBI-GeneID:
115141042
NCBI-ProteinID:
XP_029535479
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All DBs
Position
LG14:complement(10404807..10416621)
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AA seq
834 aa
AA seq
DB search
MCGWDQSFSATSHSSAMLTTEGAHTVEHDVVKMDTEPHGDTETQMGTGSKMATDTDSKMD
EADMMKWTEAEFEEKCTYIVKDTPREAGTESEGLTRAEASLPRNLAFKQLAESKEVIGVA
SREYIPKGTRFGPLVGQIYTADSVPKDANRKYFWRIYSQGDFHHFVDGLDEERSNWMRYV
NPAHSAGEQNLAACQNGTNIYFYTVRAIPPGTELLVWYCPEFAHRLHYPPSGELMMQKLK
QSLLEAKQQASEEHVSRSSAPVKIEHSVSSILRGPTTSSKREPSRPLATRPRCADSPERP
LYPRALYPPFRPHPHLTEEFLSCKTSPVQFGYTVIRSPGNQSSATPSPSARSSPESSPHG
SPAAPQPTPPSSSFYSRGLGPFPGYSPPAAPLSSPFYPPGPHYSRYMLPHHYPLPGGGVP
TVGGMFPRMYPLFSSLLPPHMPLLPGEAGRRFLLPDSSHPSFSTHRDFLHSAPTSAFSAA
TTIKDKAGPHYPNHPYPGHAHPHPHGHPHAPTSGSPTAGTAAPSERVPTKPTSALLGSAS
GRQEEEAMNLSKMKRGGGSTGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVH
SGERPFKCSTCSKGFTQLAHLQKHFLVHTGEKPHECSVCHKRFSSTSNLKTHLRLHSGEK
PYSCKLCPAKFTQFVHLKLHKRLHSRERPHKCPHCHRHYIHLCSLRLHLKGYCLAAVTSS
GGPTPSPSTQEELQRINEEIERFDMSDHAERLDQLQGGVEVEAVLEKQVLGMLWREMDLK
TSGYHHHKGGASELQSTGCGLYNSVNETSVIKLRRSSPLLPSNVTIKQESEEQA
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctgggaccaaagcttctcggctacctctcatagctcggccatgttgactact
gagggggcccacaccgtagagcacgacgtcgtcaaaatggacacggaaccccacggggac
acggaaactcagatgggcacaggatccaaaatggccaccgacacagactctaagatggac
gaggcggatatgatgaagtggacggaggcagagtttgaggagaagtgtacctacatcgtc
aaggatactccgcgggaggcaggaacggagagcgaggggttaacgagagcagaggcctcg
ctgcctcgtaacctggccttcaaacaactagcggaatccaaagaggtgattggagtggcc
agcagagagtacatccccaaaggaacacgcttcggccccttggtgggtcagatttacact
gcagacagcgtccccaaagacgccaacaggaagtacttctggaggatctactcgcagggc
gacttccaccactttgtggacggcctggacgaggagcggtctaactggatgcgctacgtc
aacccggcccactcggcgggggagcagaacctggcggcgtgccagaatggcacgaacatc
tacttctacacggtgagggccatcccccctggcaccgagctgctggtgtggtactgccca
gagttcgctcaccgcctccactacccgccttctggagagctcatgatgcagaaactcaag
cagtctctactggaagccaagcagcaggccagtgaggagcatgtcagccgcagcagcgcc
ccagtcaagatcgaacacagtgtctcctccatcctcaggggccccaccacctccagcaag
agggagcccagccggccactggccacgcgaccccgctgtgctgacagccccgagcgacct
ctgtacccccgtgccctctaccccccattccgcccccaccctcatctgactgaagagttc
ctgagttgtaagaccagcccagtacagtttggttacacagtgatcagatcaccaggcaac
cagtcgtcagcgaccccaagtccgtcggcgcggagcagtccggagagtagcccccacggt
agccccgcagctccccaacccacacccccatcctcctctttttactcccgaggtttgggt
cccttcccaggctactctccaccagccgcccccctttcctcgcccttctaccctcccggc
ccgcactactcccgctacatgctaccccaccactacccactacctgggggtggggtgccc
actgttgggggcatgtttccaagaatgtaccctctcttcagcagcctgctgcccccccac
atgcccctgctgcctggggaggcggggagaaggttcttactgcctgactcctcccacccc
tcattctccacccacagggacttcctccactccgcccccaccagtgccttctcggccgcc
accaccatcaaggacaaggccggcccccactaccccaatcacccctaccctggccatgct
catcctcacccacacgggcacccccacgcccccaccagtggctcccctacagcgggcacg
gcagcccctagcgagcgtgtgcccaccaagcctacctcagccctgctgggcagtgccagc
ggccggcaagaggaggaggccatgaacctgagcaagatgaagcggggtggtggctctaca
ggctacaagaccctgccttacccactcaagaagcagaacggcaagatcaagtacgagtgt
aacgtctgcagcaagaccttcggccaactctctaacctcaaggtgcacttgcgtgtccac
agcggtgagcgacccttcaagtgttcgacctgcagtaagggcttcacccagctggcccac
ctgcagaaacacttcctggtgcacactggagagaagccccatgagtgctcggtttgccat
aagcgcttcagtagcaccagcaacctaaagacccacctgcgcctccactcgggtgagaag
ccctactcgtgcaagctctgccctgccaagttcacccagtttgtccacctcaagctgcac
aagcgccttcactcccgcgagcggccacacaagtgcccccactgccaccgccactacatt
cacctgtgcagcctgcggctacacctgaagggctactgcctggctgccgtcacctcctca
ggtggccccacccccagcccctctacccaggaagaactccagcgcatcaatgaggagatt
gagcgcttcgacatgagcgaccacgctgagaggctggaccagctccagggaggggttgag
gtcgaggctgtcctggagaagcaggtcctggggatgctgtggagggagatggacctcaag
acctccggctaccaccaccacaagggcggcgcaagcgaactccagtctacaggttgcggc
ctgtacaattcagtcaatgagacgtctgttatcaaactgcgccgaagcagtccgcttctt
ccttccaacgtcacgatcaagcaggagtccgaggaacaggcttga
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