Oncorhynchus nerka (sockeye salmon): 115141043
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Entry
115141043 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115141043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115141043
03036 Chromosome and associated proteins [BR:
one03036
]
115141043
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115141043
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115141043
PBAF complex
115141043
GBAF(ncBAF) complex
115141043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
Motif
Other DBs
NCBI-GeneID:
115141043
NCBI-ProteinID:
XP_029535481
LinkDB
All DBs
Position
LG14:10526154..10547365
Genome browser
AA seq
1090 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPIGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSISEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPFSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPXPHFNVLADTPSGLTPMHHRPPQIPSGQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKVDT
DSQQPDKAESKDEAEKPSESAEKLAEGQKVKSETAEPSEREEGASEGGEGKATADKDKEA
AMETSEEDKEKAEQEAMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYA
EMKARQQMEQQQANTVAQGPAPHHGPPGPGMHHGPPHHGPPPAMHSGPGFHPMGPHHPQQ
TGPMGGPGQPMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPSPVQADGMPPASVGPQ
AAAPARVADS
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggccct
ataggcgtcggtactgcggtgggccgtaaaaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcgggcggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtagagatgttcttgaatgtagagaaaaccctagttcagaataac
tgcctgactcgaccaaccgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcagtgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtacactggggcatgtacccagacagttatgacacctgg
gtgtccaccagcgatgtggaaggggatgtggaggacccacccttctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacacagacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaaggga
ggggcagtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccacgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgccgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccnnaccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccctccggccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcttgcgt
aacgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccattgaggacccctacctggagaactctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgctgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaactgcccccgaggagcccgagaagaccgagccagcagagaccgagaaggtggacacc
gactcccagcagcctgacaaggctgagtctaaggacgaggcggagaagcccagtgagtct
gctgagaagctggccgagggacagaaggtgaagagcgagacggccgaaccgtctgaacgg
gaggagggagcgagtgagggaggagagggcaaggctacagcagacaaagacaaggaggcg
gccatggagacctcagaggaggacaaagagaaggcggagcaggaagcgatggaagaggag
gaagaggagaggaagaagttagagccggacgggggggaggggaacattgccactgcagcc
gccgctgccctcgcctcagctgccaccaaggccaagcacctggcggcagtggaggagagg
aagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggagatcaag
ctcagacactttgaggagctggagaccatcatggaccgagagaaagaggctttggagttg
cagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaagtatgct
gagatgaaggcccgccagcagatggagcagcagcaggccaacacagtggcccagggcccc
gcaccccaccatggccccccagggccaggcatgcaccacggacccccccaccacggaccc
cctcccgccatgcactccggacccgggttccaccccatgggtccccaccacccgcaacag
accggaccaatgggagggcccggtcaacccatgccaggacgcatgatgcctggcggcccc
cccactggcagcatgcctcccatgatgggtccccgccaccctggagcccccaacggcatg
taccctggcccctcgcctgtacaggctgatggtatgcccccagcatctgtgggacctcaa
gcggcagccccagcacgagttgctgacagctaa
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integrated database retrieval system
