Oncorhynchus nerka (sockeye salmon): 115141230
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Entry
115141230 CDS
T07952
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115141230
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
115141230
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
115141230
NCBI-ProteinID:
XP_029535838
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All DBs
Position
LG14:17290850..17307506
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AA seq
652 aa
AA seq
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MDQAFPSLQTSATELQLRVDFFRKLGYSPMEVRAALLKLGLSTDTNSVLGELVRSGASTG
TSNSTIPESVEDTTGPKSHTGSSMASSRTHGSPGDRPVSLLEDRRDTDSGLKPIVIDGSN
VAMSHGNKEVFSCKGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQHILMELEK
KKIVVFTPSRRVGGKRVVCYDDRFIVKLAYESGGVIVSNDTYRDLQGERPEWKRCIEERL
LMYSFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGVKCKFYHPE
RTHQSHCSLADELREKARLSSVKEDRNHTTSHLRGPQADPSPFPSYSLENDLEHRLTLEH
RGSLREGPNSQVTENMFLSWDGPHSSRNQQACSPTAVDQGQMDWPNMRSMFSPYATTDLP
YASISHECMDSGFGTYESQYSDVSQGHSKAFSPRQQQKQQGSRHPGMHPERLAQDSLQPC
RCCFHLAPFTGPQQQHHSNPHLESQSQPRYDTYSPPLFPPNMHHYSLPCNFQQGRVGAHN
FHPHQHPQKYWSDPFHGGVPQARASCSLTPSPHHHPPTPHGAPHLCSSYRNQQELNSWAQ
PPPPSAFDTDREELRKKLQAIFNPHQVDTVMGMFPNLMDAQKLAAEILNYQI
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagtctccagacctcagccactgagctccaactcagggtggac
ttcttcagaaagttgggctactcccccatggaggttcgggccgccctgctgaagctaggc
ctgagtacagacaccaactctgtactgggggagttggtccgtagcggagccagcactggt
acttctaactccaccattcctgagagtgttgaagatactactggccccaaaagccacaca
ggctccagcatggcctcctctaggacccatggctccccaggagacagaccagtctcatta
ctggaagacaggagggacacagacagtggactgaaacctatcgtcattgacggcagcaat
gtggccatgagtcatggtaacaaggaagtgttctcctgtaagggaattgagttggcagtg
atctatttcctggatagaggtcactcaaccgtcattgtgtttgtgccctcctggcgcaag
gagcagcccaggcctgatgtccccatcacagaccaacacattctaatggagctagagaag
aagaagatagttgtcttcacgccctcgagacgcgtcggtggtaaacgggtggtctgctac
gacgaccgttttattgtgaagctggcctacgagtcgggcggcgtgatcgtgtcaaacgac
acctatagggacctccagggagagcgtccggagtggaagcgctgtatcgaggagaggctg
cttatgtactctttcgtcaatgacaaattcatgcccccagatgacccgcttggtcgtcat
ggtcccagtctggagaacttcctgaggaagaagcctctactaccagaacacaaacgccaa
ctctgtccttatggtaaaaagtgcacgtatggcgtaaagtgtaagttctaccaccctgag
cgcactcaccaatctcactgctcattggctgatgagctcagggagaaggcaaggctctcc
tcagtaaaagaggaccggaatcacacgacgtcacacctgaggggcccccaggccgacccg
agcccctttccctcctattctctggagaatgacctggagcacaggctgacgttggagcat
cgcggttccctgagggagggtcccaatagccaggtaactgagaacatgtttctgtcctgg
gatgggccacactccagtaggaaccagcaggcctgcagccccacagcagtagaccaagga
caaatggactggcccaatatgcgcagtatgttctccccctacgctactactgacctcccc
tatgccagcatctcccatgagtgcatggactctggttttggcacctatgagagccagtac
tcagatgtgtcccaaggccacagcaaggccttcagtcccaggcagcagcagaaacaacag
ggttccagacatccaggcatgcatccagagaggctggcccaggacagcctccagccctgc
aggtgttgtttccatttggctcccttcacaggtccccagcagcagcaccacagcaaccca
cacctcgagtcccaatcccagccaaggtatgacacctactcgcctcctctgttcccaccc
aacatgcaccactacagcctcccatgcaacttccagcaaggcagggtgggggcacataat
ttccacccccatcagcacccccagaagtactggtcagaccccttccatggcggggtcccc
caggctagggcatcgtgtagcctcaccccgagcccccaccatcaccccccaaccccgcat
ggggccccccacttatgctcctcttacaggaatcagcaggaactcaactcctgggcccag
ccacctccaccttctgcctttgacacagacagagaggagctccgtaagaaactgcaggcc
atcttcaacccccaccaagtagatacggtcatggggatgttccctaacctgatggatgcc
cagaagctggctgcagagatcctcaattatcaaatctga
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