Oncorhynchus nerka (sockeye salmon): 115141272
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Entry
115141272 CDS
T07952
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115141272
Ion channels [BR:
one04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
115141272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Ank_5
Egg_lysin
YVC1_C
BAR_4
Motif
Other DBs
NCBI-GeneID:
115141272
NCBI-ProteinID:
XP_029535881
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All DBs
Position
LG14:complement(37451222..37482691)
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AA seq
926 aa
AA seq
DB search
MSQLYYRRTDNSSYRDRIPLRIVRAESELSGLERNYLGAVEKGDYASVKQALEEAEIYFR
ININCIDPLGRTALLIAIENENLEIIELLLTYNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSDFTPDITPIILAAHTNNYEIIKLLVQKGVSVPQPHEVRCNCME
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFMSE
YEELSQQCKQFAKDLLDQTRSSRELELILNYRDDINPLLDENTNDLARLKLAIKYTQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAGKFLTCVFIGLLFPLFSLCYLVSPKSRYGHFIR
QPFIKFICHTTSYLTFLFLLLLASQHIVSTDPNRQGPTPTVVEWMILPWVLGFIWTEIKQ
MWDGGFQDYIHDWWNLMDFVMNSLYLATISLKIVAYVKYSGFRARNEWQMWHPTLVAEAV
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YETDEGLKGCKGIRCETQNNAFSTLFETLQSLFWSVFGLISLYVTNVEADHQFTEFVGAT
MFGTYNVISLVVLLNMLIAMMNNSYQHIADHADIEWKFARTKLWMSYFEEGGTLPSPFNI
IPSPKSIWYLICWIRKHIFKITRPKKTETFGTIGRRAAINVRINHQYQEVLRNLVKRYVA
AMIRDAKTEEGLTEENFKELKQDISSFRYEVLGMMKGKVGPGGGGVAIAGSKPSEVAGAS
SLVYPDHSFKYSPKFPPATLKTNMFHVTTSMLQQRAAPSSTSSSTSPSTSQGLNRLVNGS
VVPSWTSTDTSSIPTSSTSISSPSSTPSIKDGLARKDICDFGLYSVSEEMGEADLEELDC
DGEKEEQGGARERTCTEKEDNEERGE
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaactgtactaccggaggacagacaactcctcctacagggaccggatccctctg
aggattgtcagggccgagtctgaactgtctggcctggaaaggaactacctgggagcagtg
gagaaaggagactatgcctcagtcaaacaggctctagaggaggcagagatatacttccgg
atcaacatcaactgtatagaccctttgggccgcacagctctgctgatcgctatagagaat
gagaacctggagattatagagctgctgctcacctataacgtgtacgttggtgatgctctc
ctacacgccatccgtaaagaggtggtgggggccgtggaactgctgctcaaccacaagaag
cccagcggggagaaacaggttcctcccatcctattggacaagcagttctctgacttcact
cctgacatcacacccatcatcctagcagctcacaccaacaactatgagatcatcaaactg
ctggtgcagaagggggtgtctgtgccccagccacatgaggtgcgctgtaactgcatggag
tgtgtgtccagctctgatgtggatagtcttcgtcactcccgctcacgtctcaacatctac
aaggccctggccagcccatcactcatagccctctccagtgaagaccctttcctcacagcc
ttccagctctcctgggaactgcaggaactcagcaaggtggagaatgagtttatgtcggag
tatgaagagttatctcagcagtgtaaacagtttgccaaggacctgttggaccaaaccaga
agttccagagaactagagctgatcctgaactacagagatgacatcaaccctctactggat
gagaacaccaacgatctggccagactcaaactggctatcaaatacacacagaaagagttt
gtagcccagcctaactgtcagcagctgcttgcgtcccgttggtacgatgagttccctggg
tggaggcgtcgtcactgggcagggaagttcctaacctgtgtcttcatcggcctcctcttc
cccctcttctccctctgctacctggtctctcctaagagccgctatggacacttcatcagg
caacccttcatcaagtttatctgccacacaacgtcatatctcaccttcctgttcctactg
ctgctggcctcccagcacatcgtctctacagaccccaacagacaggggccgactcctact
gtggtggaatggatgatactgccctgggtactgggcttcatctggacagagattaaacag
atgtgggatggagggttccaggactacatccatgactggtggaacctcatggactttgtt
atgaactctttgtacctggctaccatttctctgaagattgttgcctatgtcaagtacagt
ggcttcagggccaggaacgaatggcagatgtggcatcctaccttggtagcagaggctgtg
tttgccatcgctaacatcttcagctccctccgcctcatctctctgtttacagctaactcc
cacctgggacctctacagatctctctgggcaggatgctgctggacatccttaagttcctg
tttatctactgcttggtgctcctggccttcgctaacggactcaaccagctctacttctac
tacgaaacagacgagggactgaagggatgcaagggcatccgctgcgaaacacagaacaac
gctttttcaacgttgtttgagacactccagtctttgttctggtctgtctttgggttgatc
agtttgtatgtgaccaacgtggaggcagaccaccagttcacagagtttgtaggggccacc
atgttcggaacctataatgtcatatctctggtggttctactcaacatgctgatcgccatg
atgaacaactcataccaacacatcgctgatcatgcagacattgagtggaagtttgcaaga
accaagttgtggatgagttactttgaagagggagggactctaccttctccattcaacatc
atcccgagccccaagtcaatctggtacttaatctgctggatcaggaaacacatcttcaag
atcaccaggcccaagaaaacagaaacatttggaactatagggagacgggctgctataaat
gtaagaataaaccaccagtatcaggaggttttgaggaacctggtgaagagatatgtagca
gccatgatcagagatgccaagacagaggaaggtctgactgaggaaaactttaaggagctg
aagcaggacatctccagctttaggtatgaggtcctggggatgatgaaggggaaggtgggg
cctgggggtgggggcgtggctatagcaggaagtaaacccagtgaagtggcaggggcctcc
agtctggtctaccctgaccactccttcaagtactcccccaagttccccccggccacgctt
aagaccaacatgtttcacgtcaccacatccatgctccagcagagggcagccccctcctcc
acatcctcgtccacatccccttccacctctcagggcttgaaccgactggtcaacggctct
gtggtaccctcttggacctccactgacacctcctccatccccacctcctccacttccatc
tcctctccctcctccactccctccatcaaagacggactggccaggaaagacatctgtgac
tttgggctctactctgtgtctgaggagatgggggaggctgacctggaggagctggactgt
gatggagagaaggaggagcagggtggagcgagggagaggacgtgtacagagaaggaagac
aacgaagagaggggagagtga
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