Oncorhynchus nerka (sockeye salmon): 115141327
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Entry
115141327 CDS
T07952
Symbol
clstn3
Name
(RefSeq) calsyntenin-3 isoform X1
KO
K22661
calsyntenin 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115141327 (clstn3)
Cell adhesion molecules [BR:
one04515
]
Cadherins
Cadherin related
115141327 (clstn3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115141327
NCBI-ProteinID:
XP_029535931
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Position
LG14:17827140..17860504
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AA seq
960 aa
AA seq
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MDRMSFLSFLLLCLTSVANGNKANKHKPWIETEYQGIVMENDNTVLLNPPLFALDKDAPL
HYAGEICGFRVHNGPTGSSSVQFEAVVLDRSTGEGLVRSKEPLDCESQREHSFTIQAYDC
GEGPDGANSKKSHKATVHVRVNDVNEFSPVFVERRYEASVPEGRLFDRIVRVEALDADCS
PQYSQICFYDIITPSVPFVIDNDGNIKNTEPLDSKRQRVHTFWVTAFDCGKNRAQADAQV
VVTVKPSCKPGWIGWSKRVEYTPGSGSIPLFPSLHLETCEETVWNIQATVELQTGHIGKG
CDRDSYSDRSVRRLCGAVRGEVDLLPPPSPAANWTSALPTLPSSDSSLVFSFNGSTHVAM
VPDSIAAAVSGDHFTLQLWMRRGGINTQPPTNQARGNRREEETIVCSTVKNGQSNDDSFS
HYSLSVHGCRLSLFYWPDVSAARPVKFLWKLEQVCDSEWHHLSLSVQFPSVTLYVDGVTF
DPALIHDNGAIPNPAPRQRLVIGACWETEDKQKDILNNTIPEGKDTGKYVGGYRGLLSGV
TVRPGSVEPHSVVECLYACREGLDFGDLETLGSGMKVHVNPSQSVLVLEGDDIESFNRAV
QQVTYRNSLRFATPGVRPLKLTTSLRCFNEESCLTLRQLEGYLVVLQPDAPQISLSGVGP
HLARPAPEFEGPRGVPLFPELRIVCSLSHAVNTAAQGMEGGALMSDAVAHTLDGCEVQPL
GEELNPEREELLVDMDALRERGLEIINTTAYIAITGAESISVYEDVLRSVRYRLAKGSAR
FERRFRLSCSEMNGRYTSNELTLEVNFLHSLDSLYHPSHLLASQQQFLHPSHHSGELSGH
TLPNPHRNSVVPGAATVIIMVCVGFLVVMVILGVFRIRSIHRRGEGTGGGSKEDSGQWDD
SALTIIVNPMESYESRMGISADTEGEGEEDEEVVESPDDANDDQRIIIKKEGRDGNPRRY
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatgagttttctctccttcctcctcctttgcttgacttcagttgccaatggc
aacaaagccaataagcacaagccatggatcgagacggagtaccagggtatcgtcatggag
aacgacaacaccgttcttctcaacccaccactgttcgccctggataaagacgctccactg
cactatgcaggtgagatctgtggcttccgggtgcacaatgggcccacgggatccagttcg
gtacagtttgaggcggtggttctggaccgctcgacaggggagggcctggtccgctctaaa
gagcccctggactgtgagagccagcgggagcacagcttcaccatccaggcctatgactgt
ggagagggccccgatggagccaacagcaagaagtcccacaaggctacggtgcatgtacgt
gtgaatgacgtaaacgagttctccccagtgttcgtggagcgtcgctatgaggcctccgtc
ccagaaggccgtctgttcgaccgcatcgtgcgcgtcgaggccctcgacgcagactgctct
ccacagtacagccagatctgcttctacgacatcatcacccccagtgttccctttgtcatc
gataacgatggtaacattaagaacacagagccattggattcgaagcgccagcgtgtccac
accttctgggtgacagcgtttgactgtggcaagaaccgtgctcaggccgacgcccaggtc
gtcgtcacggtcaaaccgtcctgcaaacccggctggatcggctggtcgaagcgggtggag
tatacccccgggtcaggcagcattcccctgttccccagtttgcacctggagacctgcgaa
gagactgtgtggaacatccaggccaccgtagagctgcagactggccatattgggaagggc
tgtgacagggacagctactcagaccgatcagtgcgcagactctgtggtgctgtgagaggt
gaagttgacttactcccgcccccgtccccagcagccaattggacctcagccttgcccacc
ctcccttcttctgattcatccctggtgttctccttcaatggctccacccatgttgccatg
gtacccgactctattgccgcagccgtatccggagaccatttcaccctccagctgtggatg
agaaggggtgggatcaacacccagcctccgactaatcaggccagaggaaaccgcagggag
gaggagactatcgtctgcagtaccgtcaagaatggtcagtcaaatgacgactccttctcc
cactactctctctccgttcacggctgccgtctatctcttttctactggcccgatgtctct
gctgcgcggcccgtaaaattcctctggaaactggagcaggtgtgtgacagcgaatggcat
cacctgtccctcagtgtccagttcccctctgtgacattgtacgtggacggagtcaccttc
gaccccgccctcatccacgacaacggagccatacccaaccctgccccacgacagcgactg
gtcattggcgcctgctgggagacagaagataaacagaaggacatccttaacaacaccatc
cctgaggggaaagacacagggaagtatgtgggtggttaccgtggcctgttgtcaggggtg
acggtgcggccagggagtgtggagcctcacagtgtggtggagtgtctgtacgcctgcagg
gaggggctggactttggggacctggagaccttgggctcaggcatgaaggtgcatgtgaac
cccagtcagtctgtgctggttctagagggtgatgacattgagagcttcaacagggccgtg
caacaggtcacctacaggaactctctccgcttcgccacccctggagtcaggccactcaaa
ctgaccacctcactcaggtgtttcaatgaggagagttgtcttacgctcaggcagttggag
ggctacctggtggtccttcagcccgatgcccctcagatctccctgtctggggtcggcccc
catctggcccgccccgcgcctgaatttgagggcccccgtggtgtacccctcttcccagag
ctgaggatcgtgtgctccctgtctcatgctgttaacacagccgctcagggcatggaggga
ggagctctgatgtcagacgccgtggcccacactctggacggctgtgaggtccagcccctg
ggggaggagctaaacccagagagggaggagctcctggtggacatggatgccctgagagag
aggggtctggagataatcaacaccactgcttacatcgccatcacaggagctgagtccatc
tccgtgtatgaggatgtccttcggtccgtccgttaccggctggctaaaggctcggcccgc
tttgagaggcggttccgtctgtcctgctccgagatgaatggcagatacaccagcaacgag
ctcacactggaggtgaacttcctgcactccctggacagtctgtaccacccgtctcacctc
ctggcctcccagcagcagtttcttcacccatctcaccactctggggagctaagtggacac
accctgcctaacccccaccgcaactcagtggtgccaggagcggccacagtcatcatcatg
gtgtgcgtgggcttcctggttgtcatggtgattctgggagtgtttcgaatccgctccatc
caccgccgtggcgagggcaccgggggagggtctaaggaggatagcggccaatgggatgac
tctgccctcaccatcatcgtcaaccccatggagtcctatgagtctcgtatgggtatctca
gctgacaccgaaggtgagggggaggaggacgaggaagtggtggagtcacccgatgacgcc
aacgacgaccagcgaatcatcatcaagaaagagggcagagacggcaacccccgtcgctac
taa
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