KEGG   Oncorhynchus nerka (sockeye salmon): 115141341
Entry
115141341         CDS       T07952                                 
Name
(RefSeq) WD and tetratricopeptide repeats protein 1-like
  KO
K11807  WD and tetratricopeptide repeats protein 1
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:one04121]
    115141341
Ubiquitin system [BR:one04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     115141341
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_Aladin PAC11 TPR_19 DSE1_N WD40_RFWD3 Beta-prop_WDR90_POC16_2nd TPR_2 NBCH_WD40 Beta-prop_WDR41 Beta-prop_WDR35_TULP_N Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_WDR19_1st ANAPC3 TPR_BSK1_C Beta-prop_VPS8 TPR_1 TPR_17 CFAP251_N TRM82_WD ASA1 RMD1-3 TPR_16 Barstar TPR_6 CFAP70_TPR_C TPR_9
Other DBs
NCBI-GeneID: 115141341
NCBI-ProteinID: XP_029535968
LinkDB
Position
LG14:18068054..18083030
AA seq 676 aa
MTCCEAMSAVNITRDILHRQIRDKRALGFQRQYHVTDPFINRLGLEAELQGHTGCVNCLE
WNERGDLLASGSDDQHCIIWDPFKHKKLTTMHTGHAANIFSVKFLPHSGDRILVTGAADT
KVHVHDVSVKETIHMFSDHTNRVKRIATAPMWPNIFWSAAEDGIIRQYDLRESSKRSEVL
IDLTEYCGQLVEAKCLAVNPQNNNYLAVGANGPFVRLYDMRMIHNHRKSASQSTSAGVHT
FCDRQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQKPYTYLLPKKCQSTDVQNGKTTNGVSNGIHLPASRLRFAESKVFSGSGELPPH
LERIKQQANDAFARQQWTQAIQFYSLGIHEASHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKALSLNPGHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALDKDIKT
ALFSKMDSAEDKKGNSSIRFHTFNRKESIPEDEVVLRERSYDYKHRYCGHCNTTTDIKEA
NFFGSKGQYIVSGSDDGSFFIWEKETANLVRILQGDESIVNCLQPHPSYCFLATSGIDPV
VRLWNPRPETESESGNGRVVEDMEGAAAANQRRMNADPLEVMLLNMGYRITGLSGRGPEG
SDDEDSSDGQVQCRPS
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgacttgctgtgaggccatgtctgctgtgaacatcaccagagacatcttgcacaggcag
atcagggacaagagagcattgggcttccaaaggcagtatcatgtcacagaccccttcatc
aatagacttggactggaggcagagttgcagggccacactgggtgtgtgaactgcctggaa
tggaacgaacggggagatctgctggcatcgggctcagatgaccaacattgcatcatctgg
gatcccttcaaacacaagaagctcaccactatgcacacagggcatgcagcaaacatcttc
tctgtgaagtttctccctcactcaggtgaccgtatccttgtgacgggtgcagcggacacc
aaggttcacgtgcatgacgtgtctgtcaaggagaccatccacatgttctctgaccacacc
aaccgcgtcaagcgcatcgctacagcccccatgtggcctaacatcttctggagtgctgcg
gaggatggcatcatcaggcaatatgacctgagggagagcagtaagcgttcagaagtgctc
atcgacctgacggaatactgtggtcagctggtggaggccaagtgtttggctgtcaacccg
caaaataataactacctagcagtgggggccaacgggccctttgtacgcctctatgacatg
cgcatgatccacaaccacaggaagtctgcgagtcagagcacatcggcaggagtgcacaca
ttctgcgacaggcagaagcccatcccagacggagcggggcagtattatgtcgcagggcac
ctgccagtgaagctccctgactacaataaccgcctgagggtcctagtggccacctatgtc
accttcagccccgacggcaccgagctgctagttaacatgggaggggaacaggtgtatcta
tttgacttgacgttcaaacagaagccgtacacctatctgcttcccaaaaagtgtcaatca
acagatgttcagaatggaaagacaaccaacggtgtgtcaaatggaattcacttgccagcc
agccgacttcgattcgcagaaagcaaagtcttctctggttctggtgagctgccgcctcac
ttggagcggataaagcagcaggcaaacgatgcgtttgcgcggcagcagtggactcaggcc
atccagttctacagtctgggcatccacgaggccagccacaacgccatgctgtacgggaac
cgcgccgccgcctacatgaagcgcaagtgggacggtgaccactatgatgcgctgagggat
tgtctgaaggccctgtccctcaaccctgggcacctgaaggcccacttccggctggcgcgc
tgcctctttgagctgaagtacgtggccgaggctctggagtgcctggatgacttcaagggc
aagttccccgagcaagcccacagcagcgcctgcgacgccctggataaggatatcaagacc
gccctcttttccaagatggactctgctgaggacaaaaagggcaacagctcaatccgcttc
cacacgttcaacaggaaggagtccattccggaagacgaggtcgtcttgagagagcgcagc
tacgactacaaacaccgctactgtggtcattgcaacactaccacagacatcaaggaggcc
aacttctttggcagtaaaggccagtacattgtgagcggctccgacgacggctcctttttc
atctgggagaaggagactgctaacctggtgcggatcctccagggggacgagtccatagtc
aactgcctgcagcctcaccccagttactgcttcctggctaccagcggcatcgaccctgtg
gtgcggctctggaaccccaggccagagacggagagtgagagtgggaacggtcgtgtggtg
gaggacatggagggcgccgctgcagccaaccagcggcgtatgaatgccgaccccctggag
gtcatgctgctcaacatgggctaccgcatcacgggcctcagtggccgtgggccagagggc
tcagacgatgaggacagctcagatggccaggtgcagtgccggcctagctag

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