Oncorhynchus nerka (sockeye salmon): 115141341
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Entry
115141341 CDS
T07952
Name
(RefSeq) WD and tetratricopeptide repeats protein 1-like
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115141341
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115141341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
TPR_19
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
TPR_2
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_HPS5
ANAPC3
TPR_1
TPR_17
TPR_16
Barstar
TPR_6
TPR_9
Motif
Other DBs
NCBI-GeneID:
115141341
NCBI-ProteinID:
XP_029535968
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Position
LG14:18068054..18083030
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AA seq
676 aa
AA seq
DB search
MTCCEAMSAVNITRDILHRQIRDKRALGFQRQYHVTDPFINRLGLEAELQGHTGCVNCLE
WNERGDLLASGSDDQHCIIWDPFKHKKLTTMHTGHAANIFSVKFLPHSGDRILVTGAADT
KVHVHDVSVKETIHMFSDHTNRVKRIATAPMWPNIFWSAAEDGIIRQYDLRESSKRSEVL
IDLTEYCGQLVEAKCLAVNPQNNNYLAVGANGPFVRLYDMRMIHNHRKSASQSTSAGVHT
FCDRQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQKPYTYLLPKKCQSTDVQNGKTTNGVSNGIHLPASRLRFAESKVFSGSGELPPH
LERIKQQANDAFARQQWTQAIQFYSLGIHEASHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKALSLNPGHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALDKDIKT
ALFSKMDSAEDKKGNSSIRFHTFNRKESIPEDEVVLRERSYDYKHRYCGHCNTTTDIKEA
NFFGSKGQYIVSGSDDGSFFIWEKETANLVRILQGDESIVNCLQPHPSYCFLATSGIDPV
VRLWNPRPETESESGNGRVVEDMEGAAAANQRRMNADPLEVMLLNMGYRITGLSGRGPEG
SDDEDSSDGQVQCRPS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacttgctgtgaggccatgtctgctgtgaacatcaccagagacatcttgcacaggcag
atcagggacaagagagcattgggcttccaaaggcagtatcatgtcacagaccccttcatc
aatagacttggactggaggcagagttgcagggccacactgggtgtgtgaactgcctggaa
tggaacgaacggggagatctgctggcatcgggctcagatgaccaacattgcatcatctgg
gatcccttcaaacacaagaagctcaccactatgcacacagggcatgcagcaaacatcttc
tctgtgaagtttctccctcactcaggtgaccgtatccttgtgacgggtgcagcggacacc
aaggttcacgtgcatgacgtgtctgtcaaggagaccatccacatgttctctgaccacacc
aaccgcgtcaagcgcatcgctacagcccccatgtggcctaacatcttctggagtgctgcg
gaggatggcatcatcaggcaatatgacctgagggagagcagtaagcgttcagaagtgctc
atcgacctgacggaatactgtggtcagctggtggaggccaagtgtttggctgtcaacccg
caaaataataactacctagcagtgggggccaacgggccctttgtacgcctctatgacatg
cgcatgatccacaaccacaggaagtctgcgagtcagagcacatcggcaggagtgcacaca
ttctgcgacaggcagaagcccatcccagacggagcggggcagtattatgtcgcagggcac
ctgccagtgaagctccctgactacaataaccgcctgagggtcctagtggccacctatgtc
accttcagccccgacggcaccgagctgctagttaacatgggaggggaacaggtgtatcta
tttgacttgacgttcaaacagaagccgtacacctatctgcttcccaaaaagtgtcaatca
acagatgttcagaatggaaagacaaccaacggtgtgtcaaatggaattcacttgccagcc
agccgacttcgattcgcagaaagcaaagtcttctctggttctggtgagctgccgcctcac
ttggagcggataaagcagcaggcaaacgatgcgtttgcgcggcagcagtggactcaggcc
atccagttctacagtctgggcatccacgaggccagccacaacgccatgctgtacgggaac
cgcgccgccgcctacatgaagcgcaagtgggacggtgaccactatgatgcgctgagggat
tgtctgaaggccctgtccctcaaccctgggcacctgaaggcccacttccggctggcgcgc
tgcctctttgagctgaagtacgtggccgaggctctggagtgcctggatgacttcaagggc
aagttccccgagcaagcccacagcagcgcctgcgacgccctggataaggatatcaagacc
gccctcttttccaagatggactctgctgaggacaaaaagggcaacagctcaatccgcttc
cacacgttcaacaggaaggagtccattccggaagacgaggtcgtcttgagagagcgcagc
tacgactacaaacaccgctactgtggtcattgcaacactaccacagacatcaaggaggcc
aacttctttggcagtaaaggccagtacattgtgagcggctccgacgacggctcctttttc
atctgggagaaggagactgctaacctggtgcggatcctccagggggacgagtccatagtc
aactgcctgcagcctcaccccagttactgcttcctggctaccagcggcatcgaccctgtg
gtgcggctctggaaccccaggccagagacggagagtgagagtgggaacggtcgtgtggtg
gaggacatggagggcgccgctgcagccaaccagcggcgtatgaatgccgaccccctggag
gtcatgctgctcaacatgggctaccgcatcacgggcctcagtggccgtgggccagagggc
tcagacgatgaggacagctcagatggccaggtgcagtgccggcctagctag
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