Oncorhynchus nerka (sockeye salmon): 115141364
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Entry
115141364 CDS
T07952
Name
(RefSeq) WD and tetratricopeptide repeats protein 1-like
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115141364
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
115141364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
TPR_19
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
NBCH_WD40
Beta-prop_IFT122_1st
TPR_2
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
ANAPC3
Beta-prop_SPT8
TPR_1
TPR_17
Beta-prop_SCAP
Barstar
TPR_16
TPR_6
Beta-prop_IFT140_1st
TPR_9
Motif
Other DBs
NCBI-GeneID:
115141364
NCBI-ProteinID:
XP_029536012
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All DBs
Position
LG14:18393712..18411472
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AA seq
676 aa
AA seq
DB search
MTCCEAMSAVNITRDILHRQIRDKRALGFQRQYHVTDPFISRLGLEAELQGHTGCVNCLE
WNEQGDLLASGSDDQHCIIWDPFKHKKLTTMHTGHAANIFSVKFLPHSGDRILVTGAADT
KVHVHDVSVKETIHMFSDHTNRVKRIATAPMWPNTFWSAAEDGIIRQYDLRESSKRSEVL
IDLTEYCGQLVEAKCLAVNPQNNNYLAVGANGPFVRLYDMRMIHNHRKSASQSTSAGVHT
FCDRQKPIPDGAGQYYVAGHLPVKLPDYNNRLRVLVATYVTFSPDGTELLVNMGGEQVYL
FDLTFKQKPYTYLLPKKCQLTDVQNGKTTNGVSNGIHLPASRLRFPESKVFSGSGELPLH
LERIKQQANDAFARQQWTQAIQFYSLGIHEASHNAMLYGNRAAAYMKRKWDGDHYDALRD
CLKALSLNPGHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSCACDALDKDIKA
ALFSKMDSAEDKKGNSSIRFHTFSRKESIPEDEVVLRERSYDYKHRYCGHCNTTTDIKEA
NFFGSKGQYIVSGSDDGSFFIWEKETANLVRILQGDESIVNCLQPHPSYCFLATSGIDPV
VRLWNPRPETESESGNGRVVEDMEGAAAANQRRMNADPLEVMLLNMGYRIAGLSGRGPEG
SDDEDSSDGQVQCRPS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacttgctgtgaggccatgtctgctgtgaacatcaccagagatatcctgcacaggcag
atcagggacaagagagcattgggcttccaaaggcagtatcatgtcacagaccccttcatc
agtagacttggactggaggcagagttgcagggccacactgggtgtgtgaactgcctggaa
tggaacgaacagggagatctgctggcatcgggctcagatgaccaacattgcatcatctgg
gaccccttcaaacacaagaagctcaccactatgcacacagggcatgcagcaaacatcttc
tctgtgaagtttctccctcactcaggtgaccgtatcctcgtgacgggtgcagcggacacc
aaggttcacgtgcacgacgtgtcggtcaaggagaccatccacatgttctccgaccacacc
aaccgcgtcaagcgcattgctacggcccccatgtggcctaacaccttctggagtgctgcg
gaggacggcatcatcaggcaatatgacctgagggagagcagtaagcgttcagaagtgctc
atcgacctgacggaatactgtggtcagctggtggaggccaagtgtttggctgtcaacccg
caaaataataactacctagcagtgggggccaacgggccctttgtacgcctctatgacatg
cgcatgatccacaaccacaggaagtctgcgagtcagagcacatcggcaggagtgcacaca
ttctgcgacaggcagaagcccatcccagacggagcggggcagtattatgtcgcagggcac
ctgccagtgaagctccctgactacaataaccgcctgagggtcctagtggccacctacgtc
accttcagccccgacggcaccgagctgctagttaacatgggaggagaacaggtgtatcta
tttgacttgacgttcaaacagaagccgtacacctatctgcttcccaaaaagtgccaatta
acagatgttcagaatggaaagacaaccaacggtgtgtcaaatggaattcacttgccagcc
agccgacttcgattcccagaaagcaaagttttctctggttctggcgagctgcctcttcac
ttggagcggataaagcagcaggccaacgacgcgtttgcgcggcagcagtggacgcaggcc
atccagttctacagtctgggcatccacgaggccagccacaacgccatgctgtacgggaac
cgcgccgccgcctacatgaagcgcaagtgggacggtgaccactatgatgcactgagggat
tgtctgaaagccctgtccctcaaccctgggcacctgaaggcccacttccggctggcacgc
tgcctctttgagctgaagtatgtggccgaggctctggagtgcttggatgacttcaagggc
aagttccccgagcaagcccacagctgtgcctgcgacgccctagataaggatatcaaggcc
gccctcttctccaagatggactctgctgaggacaaaaagggcaacagctcaatccgcttc
cacacgttcagcaggaaggagtccatcccggaagacgaggtcgtcttgagagagcgcagc
tacgactacaaacaccgctactgtggtcattgtaacaccaccacagacatcaaggaggcc
aacttctttggcagtaaaggccagtacattgtgagcggctccgacgacggctcctttttc
atctgggagaaggagactgctaacctggtgcggatcctccagggggacgagtccatagtc
aactgcctgcagcctcaccccagttactgcttcctggctaccagcggcatcgaccctgtg
gtgcggctctggaaccccaggccggagacggaaagtgagagtgggaacgggcgcgtggtg
gaggacatggagggcgccgctgcagccaaccagcggcgtatgaatgccgaccccctggag
gtcatgctgctcaacatgggttaccgcatcgcgggcctcagcggccgcgggccagagggc
tcagacgatgaggacagctcagacggccaggtgcagtgccggcccagctag
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