Oncorhynchus nerka (sockeye salmon): 115141427
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Entry
115141427 CDS
T07952
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115141427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115141427
03021 Transcription machinery [BR:
one03021
]
115141427
03036 Chromosome and associated proteins [BR:
one03036
]
115141427
Transcription factors [BR:
one03000
]
Eukaryotic type
Helix-turn-helix
ARID
115141427
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115141427
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115141427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
115141427
NCBI-ProteinID:
XP_029536125
LinkDB
All DBs
Position
LG14:22545006..22569411
Genome browser
AA seq
2332 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDSNEDSILGEKQQENKQSGLERGSPGRGDLQDGADV
GNAGGGGEPEMKNGNGNPSRTINNQNDSIGSEGNNHPGMVHHHGSGFPPPSYGYSQHYGR
APFHQHGGQQSPGMAAAAGPAVQSSNMMDPYQPNSHDHGFSNHQFNNYNPFPNRTPYSGQ
GYGMNPSRNTQAPAAGGQPANVKQQPAGGPTAMAASYNNQRYNMGNPQPTSTPTLNQLLT
SPSSTRVYPNYPSSEYSNQEGASKGQTDTGSSGQYGGGNPGWQQRTHHPPPMSPGSTGQP
LGRSQPPGAMDPMAKMRGQPYVGGSPYSQQPGQGPPPGAQQGHAYPGQGYGPLSSQRYPV
AIQGRTPGAMGGMHYGQQMQSYGQQGPGGYGPPGQGPYYSQQGQASHPGQQQGPYPQAPL
GQQGGQTPYPQQPHPSQTSSSHAQGGPPYPQPHMPPQSQGPQPGPSQGPPQSQPPYSQGP
VQAQTQSGQPPYPQQQGPPSQPPQQASSQVPAGSQPQLSYPTQGPQQISTQQQQPQTPAQ
PPQQPPGHSQHPQVQPASYSQNPPQQQQQQSQQSPYQRFPPPPQQEISQDSFSSQSSAPP
SNQPKSGSEDVSVQGRPSSLPVSPHPTCAKDLSGSIDDLPTGTDGALSPGVSTSGVSSSQ
GEQSNLAQSPFSPHTSPHLPGIRGPSPSPAGSPASATTSRTGPLSPATMPGTQMPPRPSS
VQSDGSLHPAMSQSPMAQDRGFMQRNPQMPPYGSPQSASPLSPRQSSGGQMHPGMGPYQQ
QNNSMGGYGPQGGQYGPQGYPRQPGYNNMPNANYPGMGNPMNPGNPLSGQGGLPFAGIPP
GRMPPGQVGVRPYGPNMGPNMPPNMGNMPPQVGSGMCPPPGLNRKAQEAAAVVMQHAATN
SIHSRMPGYPNMPPGMMGPGAPYGPPMNNMPGMMNAQGGSPFPMGPNMANNSSGLAPSPE
FGMDGKMNQGQKMNNKVDGTPKAEPTKSKKSSSSTTTNEKITRLYELGPELERKMWVDRY
LGFIEEKAMGMTNLPAVGRKPLDLFRLYVSVKEIGGFAQVSVNKNKKWRELSTNLNVGTS
SSAASSLKKQYIQCLYAFECKIERGEDPPPEIITDNKKANQAKVQPPSPAGSGSLQGPQT
PQSTSSSMAEGSDLKPPTPASTPHPTQMPPGARSNVAVQDPFADGSDPTFPRRNSMTSNS
GYQSGMSTPEMPGRMGPGPYEGPGPNKDPFGAMRKVGEQFLPASQGPNSGMAEQQQFNRG
PPPGAMGNMSMAQRQQYGPGPYGQGYERRPEQGMGPEGSMGSGAPQPNLMPANADTGMYS
PNRYPSQQQPRNDSYGNQYPGHGTPTGGSYPNQQPGMYPQQQQNYKRPVEGGYPPAKRHE
GEMYSGPFSAGLQQQQPQPGAASAPPAGQPEMYQPQYSSGSFPGTDRRLPGPQGQFPFPF
NRERMQATTGPNAQPSMPPQMMQPSPDGPQGGAWQGRGEMNYPGNYPNRQGGPPGGSAQG
PGHPGMNRGSEEIMSSEQRMNHEGQWGPGQMGPRQPPYVPGGTAPPMTRTLQSNYQSAQA
MQNHIPQVSSPSPMPRGGPMESRTSPSKSPYMHSGVKMQKAGPPVPASHIVPQSVQSPLI
RRDMPFPPGSVEATHPILKPRRRLTTKDIGTPEAWRVMMSLKSGLLAESTWALDTINILL
YDDNSISTFNLNLLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDPDALDRDWS
CTEDEESGVEDIEGEEDDDDEEEEVVVQHSKQPAGTTIEGQAPVKQEDEQESCSERDTLK
EKDAEDEEKSFSNFEQPSSSSDPPALGPATPQERPKQASKFDKLPLKMVRKKDPFPAGRA
SQRGNVQEFDSGLLHWSAGGGDSTEHIQTHFERREEFLVPRERVLVVPTAKRKRLETEMV
GDKDNATPTEKDKQKGGGDQRPSQPSSTEKASTTTDTSADGKEGKSEHSDAETEETSQTE
EPQSQQENDKPSGPPQQVPQRVVEDEPHSKDEGPLLTLANWQDALARRCVCVSNIVRSLS
FVPGNDQEMSKHPGLMLLLGRLVLLHHRHPERKQAPLTYEKEEESDDCLGQRDEWWWDCL
SLLRENCLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSAMS
PQRLVLETLSKLSIQDNNVDLVLATPPLGRLEKLYGTLVRLVGERKVAVCREMSVVLLAN
LAQGDSMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSNDMMRR
AARALHALAKVEENHSEFTLYESRLLDLSVSPLMNSVVSHVICDVLFLIGQS
NT seq
6999 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactctcaacacaagcccgccttccgaactaaag
aagccggatcgagactcaaatgaggattctatactgggggaaaagcagcaggaaaacaag
cagtcgggattagagcgcggatctccgggccggggggatctgcaggacggggccgatgtt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaacgggaacccgtccagg
actattaataatcagaatgattccatcggatccgaggggaataaccatcccgggatggta
caccaccatgggtccggttttcctccaccttcttatggatacagtcaacactacggccgg
gccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcaggtcca
gccgtgcagtcgagcaatatgatggacccatatcaacccaattcgcacgaccatggcttt
tctaaccaccagtttaacaattacaatccattcccgaacagaactccctattctggccaa
ggatacggcatgaacccctcgcgtaatacccaggctccggctgctgggggacagccagct
aacgttaagcagcaaccagcaggaggacccacagcaatggctgcatcttacaacaatcag
agatataatatggggaatccacagccaacatctaccccaaccctcaaccagctcctaacc
tctccgagctccacgcgggtatatccaaattacccatctagtgaatatagtaatcaggaa
ggagctagtaagggacaaacagacacgggcagtagcggtcagtatggaggggggaatccg
ggttggcaacaaaggacccatcatccgccgcctatgagccctggaagtacagggcaaccc
ctaggtagaagccagcccccaggtgcaatggatccgatggctaaaatgagaggccagccg
tatgttgggggcagtccatactcccaacagcctgggcaggggcctcccccaggagcccag
cagggtcatgcatacccgggccaaggctacggtccacttagctcccagagatacccggtg
gccattcagggccgcacccctggggctatgggaggcatgcattacgggcagcagatgcaa
tcttatggacagcagggaccaggaggctatgggcctccgggccaagggccctactacagc
caacagggccaggcttcacacccaggccagcagcaagggccctacccccaggcacctcta
ggacagcagggtggtcaaacaccctaccctcagcagccccacccttcccagacgtcatcc
tcccatgcccagggtgggccgccctatccgcagccccatatgcccccccagtcccagggc
ccgcagccaggtccatcccaagggcccccacagtctcaacctccctactcccagggccct
gtccaggctcagacccagtctggtcagcctccttacccccagcagcaggggcctcccagc
cagccaccacagcaggccagctcccaagtcccagcagggtcgcaaccccagcttagctat
cccacgcagggcccacagcagatctccacacagcagcagcaaccccagacacccgctcaa
ccccctcagcaaccaccaggtcacagccagcatccacaggtccagcctgcatcctactcc
cagaatcccccacagcaacaacagcaacagtcacagcagtcaccttaccaacgcttccct
cctccaccacagcaggagatatcccaggactcgttcagttcccagtctagcgcccctccc
tccaaccagcccaaaagtggctcggaggacgtcagcgtacaaggccggccgtccagccta
ccggtgagtcctcacccaacctgtgcaaaggatctctcaggctccatcgatgacctgccc
acgggcacggatggcgctctgagtcctggcgtgagcacttcaggtgtgtcaagcagccag
ggtgagcagagcaacctggcccagtcgcccttctcgccccacacctctccccatctgcca
ggcatccgagggccctcgccgtcgcccgccggctcccctgccagtgccaccacctcccgc
acaggacccctctcacccgccacaatgccagggacccagatgccccctagaccatcgagt
gttcagtctgacgggagtctgcaccccgccatgagccagtctcccatggcccaggacaga
gggttcatgcagagaaacccccagatgcccccctacggctcaccacagtctgcctctccc
ctgtcaccccgacagtcctctggaggccagatgcaccctgggatgggaccttatcagcag
cagaacaactccatggggggctacggacctcagggtgggcagtatggcccacaaggttat
ccccggcaacctggatacaacaacatgcccaatgccaactaccctggcatgggcaacccc
atgaaccctggcaacccactgtctgggcaaggggggctgccatttgcaggcatcccccct
ggtagaatgcctccgggccaggtgggagtgcgtccctatggccccaacatggggcccaac
atgccacccaacatgggtaacatgccacctcaggtgggctcagggatgtgccctcccccc
ggcctcaaccggaaggcccaggaggctgcagctgtagtcatgcaacacgctgctaccaac
tccatacacagcaggatgcctggctaccccaacatgccccctggcatgatgggccctggc
gccccctatggccctcccatgaacaacatgcctggcatgatgaacgcgcagggcggctcg
cctttccctatggggcccaacatggccaataactccagtggtttggccccaagtccagag
tttggtatggatggaaaaatgaaccagggccagaagatgaacaacaaagtggacggaaca
ccgaaagcggaaccgactaaatccaagaagtcgagctcttccacgacaaccaacgagaag
atcacccgtctgtacgagttgggccccgagctcgagaggaagatgtgggtggaccgctac
ctgggctttatcgaggaaaaagccatgggcatgaccaacctgcctgctgtgggccgcaaa
cccctagacctcttcagactctacgtctcggtcaaggagattggaggcttcgcacaggtc
agtgtgaacaagaacaagaagtggcgtgagctgtccaccaacctgaacgttggcacgtca
agcagcgccgccagctccctgaagaagcagtacatccagtgtctgtacgccttcgagtgc
aagattgaacgcggggaggacccccctcctgagatcatcactgacaacaagaaggccaac
caggccaaggtccagccaccctccccagctggatcaggttctctccagggccctcagact
ccccagtccaccagcagctctatggccgagggcagcgacctcaagccccccacacctgcc
tccaccccacaccccacccagatgccacccggggccaggagcaatgtggccgtgcaggac
ccatttgctgacggtagtgaccctactttccccagaaggaactccatgacctctaactct
ggctaccagtctggcatgagcaccccagagatgccaggtcgcatgggtccagggccctat
gagggtccagggcctaacaaagacccctttggtgccatgcggaaagttggggagcagttc
ttgcctgccagtcagggtcctaacagtgggatggctgagcagcaacagtttaaccgtggg
cctccaccaggtgctatggggaacatgtcgatggctcagagacagcagtatggaccaggc
ccttacggacaaggctacgagaggaggccagagcaggggatgggcccagagggcagcatg
ggatctggtgcaccgcagccaaacctgatgcccgctaacgccgacacagggatgtactcg
ccaaaccgctacccatcacagcagcagccacggaatgattcctatggtaatcaatatcct
ggccatggtactcccactggtggttcctatcccaatcaacagccaggaatgtacccacag
caacaacagaactacaagcgtcctgtggaagggggctacccaccagcgaagcgacacgag
ggggagatgtacagcgggcccttcagtgcagggctgcagcagcaacaaccgcagccaggg
gcggcctctgcaccccctgctggccagccagagatgtaccaaccacagtacagcagcggc
tccttccccggcactgaccgccgcctgcctggtccccagggccagttccccttccccttc
aacagagagcgcatgcaggccaccactgggcccaacgcccagccctccatgcctcctcag
atgatgcagccaagccctgacggcccccagggtggcgcgtggcagggccgcggggagatg
aactatcctggcaattaccccaaccggcagggtggccccccagggggctcagcccaggga
cccggacaccccggcatgaaccgcggttcggaggaaattatgtcatcggagcaacgcatg
aaccacgagggccaatgggggccaggtcagatgggtcctcggcagcccccctacgttcct
ggagggacggccccgcccatgacccgcaccctgcagtccaactaccaatccgctcaggcc
atgcagaaccacattccacaggtgtccagtccttcccccatgccccgtgggggccccatg
gagagccggacgtcgcccagtaaatctccctacatgcacagtggcgtcaagatgcaaaag
gcagggcccccggtccctgcctctcacatagtgccccagtctgtacagtcccctctgatc
cgtagagatatgccctttcccccaggctcagtggaggccacccaccctatcctaaaacca
cgccgacgcctcaccacgaaagatatcgggaccccagaggcttggagggtgatgatgtcc
ctcaagtctggactgttggctgagagcacgtgggccctcgacaccatcaacatcctcctg
tatgatgacaacagcatctccaccttcaacctcaatttgctgcctggcctgctggagctg
gtggtggagtacttccggcgctgcctcatcgagatcttcggcatcctgcgcgagtacgag
gtgggcgaccccggccagaggactctactggaccctgacgccctggacagagactggagc
tgcacggaagatgaggaatcaggggtggaggacatagagggagaggaggatgacgacgat
gaggaagaagaggtggtggtgcaacattcaaaacagccggccgggacgacaatcgaggga
caggctccggtgaagcaagaggatgagcaggagtcgtgctcagaacgggacactctgaaa
gagaaggacgctgaagatgaggagaagagcttctctaactttgagcagcccagctcttca
tcggacccccctgccctgggcccggctaccccccaggagagacccaaacaggctagcaag
ttcgacaagctccccctgaagatggtacggaagaaggacccgtttccggcaggcagggca
agccagagaggaaacgtgcaggagtttgacagtgggctgctccactggagcgccggcggg
ggagacagcacagaacacatccagacccactttgagaggagggaggaatttctggtccca
cgagaacgagtgctggtcgtcccaacagccaagaggaaaaggctagaaacagagatggtg
ggggacaaggacaatgctacccccacagagaaagataagcagaaaggtgggggagatcag
aggccttcccagccatcatccacagagaaggcctcaaccacaactgacacctcagccgac
ggtaaggaggggaagtccgagcactcggacgctgagacagaggaaacgtcacagacggaa
gagccccagagccagcaggagaacgacaaaccgagcggccctcctcaacaagtcccccag
cgtgtggtggaggacgagcctcacagcaaggacgagggcccactgcttacactggccaac
tggcaggatgctctagcccgccgctgcgtctgcgtctccaacatcgtgcgcagcctctcc
ttcgtgcctggcaatgaccaggagatgtccaaacaccctggcctcatgctgctgctgggt
cgcctagtgctgctgcaccaccgccaccctgagaggaagcaggccccgctcacctacgag
aaggaggaggagtctgatgactgccttggccagagggacgaatggtggtgggactgcctg
tcgctgttgagggagaactgcctggtcactcttgccaacatctctggccagctggacctc
tccatctaccccgagagcatctgccttccgctgctggacggcctcctccactgggccgtg
tgcccatcggctgaggcccaggaccccttccccacgttggggccccacagcgcaatgtca
ccccagagactggtcctggagactctcagcaagctgagcatccaagacaacaatgtggac
ctggtcctagccacgccgccgttgggtcggttagagaagctgtatgggaccttggtgcgg
ctggttggggagagaaaggtggccgtctgcagggagatgtcggtggtgttgttggccaac
ctggcccagggagacagcatggcagcgcgcgccattgccgtgcagaagggaagcgtgggt
aacctcctgggcttcttggaggacagcctggcggccacccagctacagcagagccagagc
tctctgctgcacctgcaggggatgcactttgagcccaccagtaatgacatgatgcggcgg
gcagcccgggccctgcacgccttggccaaggtggaggaaaaccactcagagttcacactc
tacgagtcacgcctccttgacctctcagtgtcacctctcatgaactcggtggtgtctcac
gtcatctgcgatgtactctttctgattggccagtcatga
DBGET
integrated database retrieval system
