Oncorhynchus nerka (sockeye salmon): 115141665
Help
Entry
115141665 CDS
T07952
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04137
Mitophagy - animal
one04140
Autophagy - animal
one04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115141665
04137 Mitophagy - animal
115141665
04148 Efferocytosis
115141665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115141665
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115141665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
115141665
NCBI-ProteinID:
XP_029536602
EnsemblRapid:
ENSONEG00000014098
LinkDB
All DBs
Position
LG14:33530630..33548715
Genome browser
AA seq
630 aa
AA seq
DB search
MDTKEEPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEMTFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVFSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVFEASEETLCDSDNSNSGELFQQLKENPEDLLQLAPVSGEPIVPLTDFAELSFSLSS
SPDSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCPEEV
VQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPTTATRKRSHEQDVDM
PSQLMSQDKRLRHSVSPIEQELLLSYTLLDCLEDTDSPELELGPHPHRRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcgggtacggatcagcggaaggtgcgt
tcccgggatgcggcacgctgccggcggagtcaggagacggagctgttctacgagctggcc
cacacccttcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgcgg
gtgacactcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggag
cgcgtcacagatggggacgaggacacgatggatgggttctacccccgggcgctggcaggt
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagctgctgggtcagagtgtgtatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagatgaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgttctccagtgacgaggactcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaggatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacatccttctatctaaaggccaggtgtgcacc
agccaataccgttttctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaacaagacctctcaaccagaggcagtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctttgaggcctcagaggagactttgtgtgacagtgacaacagcaacagt
ggagagctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtc
tctggagaacccatcgtacccctcacagactttgcggagctgtcgttcagcctttcatca
agccctgactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggtggagaagttgtttgccgtctgtccagaagaggtc
gtgcagaaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggcaccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccctccccagagccaaccactgctaccaggaaacggagccatgagcaggatgttgacatg
ccctcccagctgatgagtcaggacaagagactgagacactctgtgtcccccatcgagcag
gaactgcttctcagctacaccctactggactgcctggaggatacagatagcccagagttg
gagctggggccacacccccacaggcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccagggacgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcctctctgacttga
DBGET
integrated database retrieval system
