Oncorhynchus nerka (sockeye salmon): 115141687
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Entry
115141687 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase TRIP12 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115141687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115141687
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
115141687
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
HECT type E3
115141687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Motif
Other DBs
NCBI-GeneID:
115141687
NCBI-ProteinID:
XP_029536637
LinkDB
All DBs
Position
LG14:34188051..34241683
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AA seq
2065 aa
AA seq
DB search
MSNRPNSNPGGSLRRSQRNTAAAQPQDHTVTGRLQSEQVKHKTNSPPESRRPKSKASKAA
PSSASGQSRGHSSRSSSLSLSVASFVLQDDPDAAGTSEREPTGHQSKSEGTTRGLKRSSA
PDLNNTYTPTPAKKSKSHPPPRDHTTESKKGPAKSSKKRPLAPELPTPTGRGQSSKSGAS
GASPTQKRKKADSLPGLSSTAGSLPNRTDGRSAKPTKLASKSAASAKAGCSTVTDSSSSA
STSSSSSTGPNSATSTQGARLKQGKDQNKARRSRSASSPSPRRSTRDREQAKAAVSSKFE
WASRFSPKVNLPKPKLSLPGSSKPETSSKPGPSGLQAKLASLRKSTKKRSESPPAELPSF
RRSTRQKTTGSCASTSLCSRRGSGLGKRGAADARRQEKMADSDNNQDGANSSAARTDEAP
QGASGTASSSVAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHR
TIGSGASSKAQQLLQGLQATGDESQQLQAAIEMCQLLVMGNEETLGGFPVKSVVPALITL
LQMEHNFDIMNHASRALTYMMEALPRSSAVVVDAIPVFLEKLQVIQFIDVAEQALTALEM
LSRRHSKAILQAGGLADCLLYLEFFSINAQRNALAIAANCCQSITPDEFHFVSDSLPLLT
QRLTHQDKKSVESTCLCFARLVDNFQHEENLLQQVASRDLLTNIQQLLVVTPPVLSSGMF
IMVVRMFSLMCSNCPCLAVQLMKQNIAETLRFLLCGAANGSCQEQIDLVPRSPQELYELT
SLICELMPCLPREGIFAVDLMLKKGSAQATEGAIWQWRDDRGLWHPYNRIDSRIIETAHQ
NGEDEISLSTLGRVYTIDFNSMQQINEDTGTARGIQRKPNPLANPTTGGHQEVRREDARA
QLMKEDPELAKCFIKTLFGVLYEVYSSSAGPAVRHKCLRAILRIIFFADAELLKDVLRNH
AVSSHIASMLSSQDLKIVVGSLQMAEILMQKLPDVFSVFFRREGVMHQVKNLAESEAFLT
SPPKACTSGTASLCTTTISTATTTAASNATPDLGSPSFQHSMDDSLDLSPQGRLSDVLKR
KRLPKRGPRRPKYSPPRDDDKVDNQAKSPTTTQSPKSSFLASLNPKTWGKLGAQTNSTNS
EPSRTAGVSGMARAPPKDSVSNNRDKIKAWIKEQACKFVSRYFNTEEIDGSNPALNVLQR
LCTATEQLSLQMDGGVECLVEICSIVSESDVSSFEIQHSGLVKQLLLYLTSSSDRDLVSR
DVRLKRFLHVFYGCPIPGMEPAGRLEPSENGPLLSLVHKMNNCLSQMEQFPVKVHDFPSG
NGNGSRGSQALKFFNTHQLKCQLQRHPDCTNVKQWKGGPVKIDPLALVQAIERYLVVRGY
GRIREEDEDSDDDGSDDEIDESLAAQFLNSGSVRHRLQFYIGDHLLPYNMTVYQAVRQFS
LQSEEERESTDDEANPLGRAGIWTKTHTIWYKPVRDDEDGTKDAVGGKRGRAQTAPTKTS
PRNAKKQDELWHDGVCPSVASPLEMYLMSEPPESITFDDPSLDVNLLLRVLHSISSYWFY
LYDNAVSKEIIPTSEFINSKLTAKANRQLQDPLVIMTGNIPTWLTELGKTCPFFFPFDTR
QMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTINREELLKQAESVMQ
DLGSSRAMLEIQYENEVGTGLGPTLEFYALVSQELQRADLGLWRGEEVTLSNPKGSQEGT
KYMFSSRGLFAVPFGRTTKPAHIAKIKMKFRFLGKLMAKAIMDFRLLDLPLGLPFYKWML
RHETSISSHDLVNIDPGVAKSIQHLEDIIRQKKRLEQDLSQTRETLQQALESLNMNGCSV
EDLGLDFTLPGFPNIELKKGGKDVPVTIYNLEEYLRLVVYWTMNEGVSRQFESFREGFES
VFPLHHLQYFYPEELDQLLCGSKSETWDVKTLMECCRPDHGYTHDSRAVGFLFDVLSSFD
AEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPD
YSSIEIMRKKLLIAAREGQQSFHLS
NT seq
6198 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaccggcctaattccaatccaggggggtcactgcgccgttcacagaggaacact
gctgcggcccagccacaagaccatacagtcacgggaaggttgcagtcagagcaggtaaaa
cataaaacaaattcccctcctgaaagtagaagacctaaatctaaggcttccaaagccgca
cccagctcagcctctggccagtccagggggcacagctcaagaagtagcagtctgtcactg
tctgtggcttcatttgtgctgcaagacgacccagacgccgcagggacatccgagcgagag
ccaacaggccaccaatccaagagtgaaggcaccacccgagggttgaagagaagttctgca
cctgatctcaacaacacctacacccccaccccagccaagaagtccaaatcccaccctcca
cctagagaccataccactgagtccaagaaaggtcctgccaagtcctccaagaagagaccc
ctggctccagagctgcccacgcccacaggccgcggccagagcagcaagagcggggcctct
ggggcctcaccaacccagaaacggaagaaggctgactccctccccggtctgagcagcact
gctgggtccctccccaaccgtactgacggcagatctgcaaaacccaccaagctggcgtcg
aaatcggccgcctcagccaaagctgggtgtagcaccgtgactgactcctcctcttctgcc
tccacctcttcctcctcctccaccggcccaaacagtgccacctccacgcagggcgccagg
ctcaagcagggcaaagaccagaacaaggcacgtcgctcccgctccgcctccagcccttcc
ccacgccgaagcacccgcgacagggagcaggccaaagctgcagtctcgtccaagtttgag
tgggcctcccgcttcagtcccaaagtcaacctgccaaagcccaaattgtccctacctggc
tcctccaagcccgagacctcctccaaacctgggccctcaggactacaagccaaactagca
agtttgaggaagtccactaagaagcgcagcgagtctcctccagcagagctccccagcttt
cggcggagcacacgtcagaagaccacgggctcctgcgccagcaccagtctgtgcagtcgg
cgaggctcaggcctgggcaagcgcggggcagccgacgctcgccgacaagagaagatggcc
gactcggacaacaaccaggacggggccaactcctcggccgcccgcactgacgaggccccg
cagggggcttcaggtacagcttctagttcagtggccggagctgtagggatgaccacatcc
ggtgagagtgagtccgatgactctgaaatgggcagactccaagcccttttggaggccagg
ggtctacccccacacctctttgggcccctgggaccccgtatgtcccagctgtttcacaga
accataggcagtggagccagctccaaagctcagcagctgctgcagggcctgcaggccacc
ggtgacgagtcccagcagctccaggccgccatcgagatgtgccagctgctggtgatgggc
aacgaggagacgctaggaggcttccctgtgaagagtgtggtgcccgctctgatcacattg
ttgcagatggagcataattttgacattatgaaccacgcctcccgtgctctcacttacatg
atggaggcgctgcctcggtcctctgctgtggtcgtggacgccatccctgtcttcctggaa
aagcttcaggtgatccaattcattgatgtggcggagcaggccctgactgccttggagatg
ttgtcaaggcgtcacagcaaagccatcctgcaggctggtggcctggctgactgtctgctg
tacctggagttctttagcatcaacgcccagaggaacgccctggccattgccgccaactgt
tgccagagcatcacccctgacgagttccactttgtctctgactctctgccactgctgacc
cagagactcacacaccaggataagaaatctgtcgaaagcacttgtctctgttttgccaga
ctggtggataactttcaacacgaggagaacctgctgcagcaggtggcctcgcgggacctg
ctgaccaacatccaacagctgctggtggtcaccccgcctgtgctcagctcgggcatgttc
atcatggtggtgcgcatgttctccctcatgtgctccaactgcccctgtctggccgtgcag
ctcatgaagcagaatattgcagagactctgcgcttccttctgtgcggcgcggccaacggt
agctgtcaggagcagattgacctggtgccccgtagcccacaggagctctatgaactcacc
tcactcatctgcgagctgatgccctgccttcctagagagggcatatttgctgtggacctc
atgctgaagaagggcagtgcccaggccacagagggggccatctggcagtggagggacgac
cggggcctgtggcacccctacaaccgcatcgacagtcgcatcattgagacggcccaccag
aacggagaggacgagatcagcctgtccaccctgggccgcgtctacactattgacttcaac
tctatgcagcagataaacgaggacactggcactgcacggggtatccagaggaaacccaac
cccttagccaaccccactactgggggtcaccaggaggtaagacgggaggatgcacgggcc
cagctgatgaaggaggaccctgagctggccaagtgcttcatcaagaccctgttcggggtg
ctgtacgaggtgtacagctcgtcggccggcccagccgtcagacataagtgcctccgagcc
atcctcaggatcatcttcttcgccgatgccgagctcctcaaggatgtgctgagaaaccac
gctgtgtccagtcacattgcctccatgctgtccagccaagacctgaagattgtagttggc
tctctgcagatggccgagatcctcatgcagaagctgcccgacgtattcagtgtcttcttc
agaagagaaggtgttatgcaccaggtgaagaacctggctgagtcagaggccttccttacc
agtcccccaaaggcgtgcaccagcggcacagctagcctgtgtaccaccaccatcagcact
gcgaccactacggcggcctccaacgccaccccagacctgggctcgcctagcttccagcac
agcatggacgactcactagacctcagtccacaggggcggttaagtgatgtgctgaagaga
aaacgtctgcctaagagagggcccagaaggcccaagtactctcctcccagggatgacgac
aaagtagacaatcaggccaagagtcctaccactactcagtcccccaaatcctccttcttg
gccagtctgaaccccaagacctggggcaagctgggcgcccagaccaacagcaccaactct
gagccctctcgcacggccggggtgagcggcatggcacgcgcccctcccaaggactcagtc
tccaacaacagggacaagatcaaggcttggatcaaagagcaggcctgtaagtttgtgtcc
cgctacttcaacactgaagaaattgatggcagcaaccccgcactgaatgtactccagaga
ctctgcactgccacggaacagctcagcctgcagatggacggtggtgtggagtgcctcgtg
gagatctgcagcatcgtgtcagagtcggacgtgtcgtcgttcgagatccagcatagcggc
ctggtcaagcagctgctgctctacctgacctccagcagtgaccgtgacctggtcagccgt
gacgttcgcctcaagaggttcctgcacgtcttctacggctgcccgatcccggggatggag
ccggcaggccgcctggagccgtctgagaacggacccctgctgtcactggtgcacaagatg
aacaactgcctaagccagatggagcagtttcctgtcaaggtgcacgacttccccagtggc
aacggcaatgggagcagagggtctcaggccctgaagttcttcaacacacatcaactcaag
tgtcagctgcagaggcacccggactgtaccaatgtgaagcagtggaaggggggcccggtg
aagattgatcccctggccttggtacaggcaattgaacgttacctggttgtccgaggttac
ggacgaatcagagaggaggatgaggacagtgacgatgatggttcagacgatgaaattgac
gaatcgctggcggcccagttcctgaactctggcagcgtgcgccaccggctacaattctac
atcggcgaccacctgctgccctacaacatgacggtgtaccaggcagtgcggcagttcagc
ctgcagtccgaggaggagagagagtccacggacgacgaggccaacccgctcgggcgggct
ggcatctggaccaaaacccacaccatatggtataagccagtgagggatgatgaggatggt
actaaggatgcggtgggaggtaagaggggccgggcacagaccgcccccaccaagacctca
ccccgcaacgctaagaaacaggacgaactgtggcacgacggcgtgtgtcccagcgtggcc
agccccttggagatgtacctcatgtcggagcccccggagagcatcaccttcgacgacccg
tctctggatgtcaacctgctgctgagggtgctgcactccattagtagttactggttctac
ctgtacgacaatgctgtgtctaaggagatcatccccaccagtgagttcatcaacagtaag
ctgacagccaaggccaaccgacagctgcaggaccctctggtcatcatgaccggcaacatc
cccacctggctcacagagcttgggaagacctgtcccttcttcttcccgttcgacacacgg
cagatgctcttctatgtaacagcgtttgaccgtgaccgggccatgcagcgcctcctcgac
accaaccccgagatcaaccaatcagattctcaggacagccgcgtggcaccccgcctcgac
aggaaaaagcgaacgataaaccgtgaggagctgctgaagcaggcggagtcagtgatgcag
gacctcggcagctccagagccatgctggagatccagtatgagaacgaggtgggcacaggg
ctgggtcccaccctggagttctacgccctggtctcccaggagctgcagagggccgacctt
gggctgtggaggggtgaggaggtcaccctgtccaaccccaaaggaagccaagaagggacc
aagtacatgttcagctcccgagggctgtttgccgttcccttcggcaggacaaccaaaccg
gcgcacatcgccaaaatcaagatgaagttccgcttcctgggcaagctgatggccaaggcc
ataatggacttcagactgctggacctgcccctggggctgcccttctacaagtggatgctg
cggcacgagacatccatcagctcccacgacctggtcaacatcgacccgggcgtggcaaag
tccatccagcacctggaggatataatccgccagaagaagaggctggagcaggacctctcc
caaacaagggagaccctgcagcaagctctggagagtctcaacatgaacggctgctctgtg
gaggacctgggcctggacttcaccctgcctggtttccccaacattgagctgaagaagggg
ggcaaggatgtccctgtcaccatctacaacctggaggaatacctcaggctggtggtctac
tggacgatgaacgaaggcgtgtcccggcagtttgagtctttcagggaagggttcgagtcg
gtcttccccctgcatcacttgcagtatttctaccctgaagagttggatcagctgctttgt
ggcagtaagtccgagacctgggatgtcaagaccctgatggagtgctgtcgtcccgaccac
ggctacacgcatgacagtcgtgctgttgggttcctgtttgatgtgctcagtagttttgac
gcagagcagcagagactcttcctgcagtttgtcacaggaagccccaggctgcctgttgga
ggtttccgtagtctgaacccgccgctgaccattgtgcggaagacttttgagtcaacggag
aacccggacgacttcctgccctcggtaatgacctgcgtcaactacctgaagctgcccgac
tactccagcatcgagatcatgcgcaagaaactgttgattgcggcccgagagggccagcag
tccttccacctgtcctga
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