Oncorhynchus nerka (sockeye salmon): 115141817
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Entry
115141817 CDS
T07952
Name
(RefSeq) transcription elongation factor SPT6-like isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115141817
03036 Chromosome and associated proteins [BR:
one03036
]
115141817
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
115141817
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
115141817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
HHH_3
Spt6_S1
SPT6_acidic
S1
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
115141817
NCBI-ProteinID:
XP_029536899
LinkDB
All DBs
Position
LG14:39985781..40017558
Genome browser
AA seq
1727 aa
AA seq
DB search
MDFIESEAEESEEEFGSTAHEEEERENTEDQDEDGNLSGLIDDGVDEGEEEEEEEKEGKK
DKEGDSDSGEEIGHHKRKRSFDDRLDDDDIDLIEENLGVKVKRQKFRRLRDMSDDEDEEG
DDYVREAHEKDMIADEIFMGTGADEGEALDVPLHPGEDEQEDDEESDIDDFIVDDDGQPL
KKPKWRKKLPGYTDAALQEAQEIFGGDFDFAEFDTEAYEDAEEEEDADEESWDRPKKQTK
KRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSTCVKPAEDDELEQEAEWI
YRNAFSTLTISMQENADYLDRGPATTFSRKGPSTIQKIKEALNFMRNQHFEVPFIAFYRK
EYVEPELNINDLWKVWQWDEKWTQLKTRKQNLRRLFQKMQGYQFEQISADPDKPLADGIR
PLDTSDLERLKDVQSSDELGDVYNHFLLYYGRDIPKMQNAARSSKKKLKKIKEVDEDGNE
QEVVEEEEEEEEEHPKGPDLKLASRRDMYSICQGAGLDGLAKKFGLTPEQFGENLRDSYQ
RHETEQFPAEPMELAKDYICSQFSTAEAVLEGTRYMVAMQIAREPLVRHVLRQTFQERAK
INIKPTKKGKKDVDEAHYGFSFKYLKNKPVKELNGDQFLKMLQAEEEGLLTINVCIDLIG
VKGYGGDQAYYEEIKQFYYRDEFSHQVQEWNRQRTLAIERSLKQFLYPQMAKELKNKLIA
EAKENIIKACSRKLYNWLKVAPYRPDQQVEEDEELMSEAQGKGIRVLGVAFSSSRDTPVF
CALVNGDGEVGDFLRLPYFLKRRNAWREDEREKKIHDIETLKKFLNSKKPHIIAIAGENR
DAQMVIEDIKRTASELEQESSFPTIGVELVDNELAMLYMNSKKSEADFRDYPPLLRQAVS
VARKIQDPLVEYAQVCSSDDDILCLKLHPLQEHVVKEDLLNALYCEFINRVNEVGVDVNR
AMAHPYTQSLLQYVCGLGPRKGSHLLRILKQNNTRLENRTQLVTMCHMGPKVFINCAGFI
KIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGALEEILEN
PERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRSTYRGPNTEEIFNLLTK
ETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPELSEVWNH
FDSGSCPGQAIGVRCRMDNGVTGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMKIDIEKL
SVDLTCRTSDLSDKNNDWKLPKDTYYDFDTETEDVKQEEEAKKKQQRTTYIKRVIAHPSF
HNINFKQAEKMMESMDQGDVIIRPSSKGENHLTVTWKVADSIYQHIDVREEGKENAFSLG
HTLWINTEEFEDLDEITARYVQPMAAFARDLLGHKYFQECNGGDRKKMEEVLVKSKKEKP
TFIPYYVSACRELPGKFLLGYQPRAKPRVEFVTVTPEGFRYRGQIFPTVNGLFRWFKDHF
QDPVAGITPSSSSRTRTPASVNATPANINIADLTRAVNALPQNMTSQMFSAIAAVTGQGQ
NPNTTPAGWASSQYGYTGDSSGGGGSSSAYHVFATPAQQPIATPLLTPSYSYTTPTPSQQ
QTITTPQYPSSTPQSSHGSQGHGHRPSSSTPTSSSSSRHHRTPTPKATSHTAVDWGKMAE
QWLQEKEAERKKTRPRMTPRPSPSPMIESTPMSLAGDATPLLDEMDR
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggatttcatcgagagcgaagcagaggagtctgaggaggaatttgggagtacagcacat
gaggaggaggaacgggagaatacagaggaccaagatgaggatggaaacctcagtggtctg
attgatgatggtgtggatgaaggggaagaagaggaagaggaggagaaggaagggaagaaa
gataaggaaggagatagtgactctggggaggaaattggacaccataagaggaagagaagc
tttgacgaccgcttggatgatgatgatattgatctcattgaggagaatttgggagtgaaa
gtgaaaaggcaaaagttccgtcgtttgcgagacatgtcggacgatgaggatgaggaggga
gatgattacgtcagggaggcccatgagaaggacatgatagcggatgagatcttcatgggg
acgggagcggatgagggcgaggcattggatgtgcctttgcatcccggggaggatgagcag
gaggacgatgaagagtctgatatcgatgactttattgtggatgatgacggacagcccttg
aagaaacccaagtggaggaagaagctgccaggatatacagatgcagcacttcaggaggcc
caggagatattcggaggggactttgactttgccgagtttgacactgaagcctatgaagat
gcagaggaggaggaggatgcagatgaagagtcatgggaccggcccaagaagcagaccaag
aagagggtgggccgacgcagtatctttgagatctatgagcccagtgagctggagagcagt
cacatgacggaccaggacaatgagatccgttccactgacatgccagagaggttccagttg
cgctccacttgtgtgaagcctgcagaggatgatgagctggaacaggaggctgagtggatc
tataggaatgccttctctactctcaccatctccatgcaggagaacgcagactatttggac
agaggtccagccactacattcagcagaaaaggccccagcaccatccagaagattaaagag
gctttgaatttcatgagaaaccaacactttgaggttccgttcatagcgttctacaggaaa
gagtatgtggaacctgaactcaatatcaatgatttgtggaaagtttggcagtgggatgag
aagtggacccagctgaaaacccgcaaacagaacctgagacgcctgttccagaagatgcag
ggataccagtttgaacagatctcagcagacccagataagccactggctgatggcattcga
ccattagacacttcagatttagagcggctgaaggatgtccagtctagtgatgaactgggc
gacgtctacaaccatttcctgctgtactatggccgggatatcccaaagatgcagaatgca
gccaggtccagcaagaagaagctgaagaagatcaaagaagtggatgaagatggtaatgag
caggaagtagtagaggaggaggaagaggaagaagaggagcacccgaagggcccggacctg
aagcttgcatctcggagggatatgtacagcatctgccagggtgcaggactggatggccta
gccaagaagtttggtctgactccagagcagtttggagagaacctacgtgacagttaccag
cgtcacgagacggagcagtttcctgctgagccaatggagctggctaaggactacatctgc
agccagttcagcacagcggaggcagtactggaggggactcgctacatggtcgccatgcag
atcgctcgggagcctctagtcagacatgtgctccgacagacattccaggagagagccaag
atcaacatcaaacccaccaagaagggaaagaaggatgtggatgaggcccattatggcttc
tcctttaaatacctgaaaaacaagcctgtaaaggagctgaatggagaccagttcctcaag
atgttgcaggcagaggaagagggcctgctcaccattaacgtctgtattgacctgattgga
gtgaaggggtacggaggtgaccaggcatactatgaagagataaagcagttttactacaga
gatgagttcagccaccaggttcaggagtggaacagacagcgcactctggccatcgagcgc
tccctcaaacagttcctttacccgcagatggcgaaagagctgaagaacaaacttattgca
gaagcaaaggagaacatcatcaaggcctgcagcaggaagctgtataactggctgaaggtg
gcgccctatcggcctgaccaacaagtggaggaggacgaggagctcatgtctgaggcccag
ggcaaagggatccgcgtgctgggagtggccttctcatccagcagagacaccccagtgttc
tgcgccctggtgaatggtgacggagaagtgggggatttcctcaggcttccttacttcctg
aagaggaggaacgcatggagggaggatgaaagggagaaaaagatccacgatattgaaacc
ctgaagaagtttctgaacagcaagaagcctcacatcatcgctatagctggggagaacagg
gatgcccagatggtgattgaggacattaaacgcactgccagtgagctggagcaggagtcc
tctttccccaccattggggtagagctggttgacaatgaactggccatgctctacatgaac
agcaagaagtcagaggcagatttccgggactacccccctctcctgagacaggctgtgtct
gtggccaggaagatccaggaccccctggtggagtatgctcaggtttgcagcagtgacgat
gacatcctctgcctcaagttgcaccctttgcaggagcatgtagtgaaggaggacctgctg
aatgctttgtactgtgagttcatcaaccgggtgaatgaagtgggtgtggatgtgaaccgg
gccatggcccacccctacacccagagcctgttgcagtacgtctgtggcctggggcccagg
aagggatcccacctgctcaggatcctgaagcaaaataacactcgtctggagaaccgcact
cagctggtcaccatgtgtcacatgggccccaaggtcttcatcaactgtgctggtttcata
aagattgacacagcttctctgggagatagtactgactcctatattgaggttctggacggg
tcacgggtgcacccagagacctatgagtgggccaggaagatggccgtggacgctctggag
tacgatgagtcagcggaggacgccaacccggccggagcactggaggagatcctggaaaac
ccagagcggctcaaagacctggacttggatgccttcgctgaggagctggaaagacagggt
tatggtaacaagggcatcaccctgtatgacatccgtgctgagctgagctgcaggtacaaa
gacctgaggtccacctacagaggacctaacacagaggagatcttcaacctgctcaccaag
gagacaccagagaccttctacatcggtaaacttattaccagtgtggtgacaggcattgct
caccggcgcccccagggggagagttatgaccaggccataaggaatgatgagacaggtctg
tggcagtgtcctttctgtcagcaggacaactttcctgagctcagtgaggtgtggaatcat
tttgacagtggctcctgccctggccaagctattggggtccgctgtcgcatggacaacgga
gtcaccggctttatccctaccaagttcctcagtgacaaagtggtcaagcaccctgaagaa
agggttaaggtgggcatgacagtgcactgcaggatcatgaagattgacattgagaagctc
agtgtggatctgacctgtcggacgtcagacctgtcggataagaacaacgactggaagctt
cccaaggacacctactacgactttgacactgagacagaggatgtgaagcaggaggaggag
gccaagaagaaacagcagagaacaacctacattaagagggtgatagcccacccatcgttc
cataacatcaacttcaagcaggcagagaagatgatggagtccatggaccagggagatgtg
atcatcaggcccagtagtaagggagagaaccacctgactgttacttggaaggttgctgat
agcatctaccagcacattgacgtacgagaggagggcaaggagaacgccttcagcctggga
cataccctgtggatcaacactgaggaatttgaagatctggatgaaatcacagccagatac
gttcaaccaatggctgcgtttgctcgcgatctgctcggtcacaagtattttcaagaatgc
aatggtggagaccgaaagaaaatggaggaggtcttggtgaaaagcaagaaggagaagcct
acattcatcccctactatgtgtctgcctgtagagagctgccagggaagtttctgctcggt
taccagccccgcgcaaagccaagggttgagtttgtgactgtcacgcctgaggggttcaga
tacagaggacagatttttcccacagtcaatggacttttccgatggttcaaagaccatttc
caggatccagtggcagggattactcccagcagcagcagtagaacacgaaccccagcctct
gtcaatgccacgccagccaatattaacattgcagatctgactcgtgcagtgaacgccctc
cctcagaacatgacctctcagatgttcagtgccattgccgctgtaacgggccagggccag
aaccccaacaccacacctgccggttgggcatccagccagtacggctacactggggacagc
agcggtggggggggcagcagcagcgcctatcacgtgtttgccacaccagctcagcagccc
attgctactccccttctgacgccaagctattcgtacaccacccccacccctagccagcag
cagactatcaccacaccccaataccccagcagcactccccagtcctcacacgggtcacaa
ggacatggacaccgcccttcctcctccacaccaacatcatcatcctcttcccgccaccac
aggacaccaacaccaaaggcaacttcccacacagcagtggactggggcaagatggccgag
cagtggctccaggagaaagaggcagagcgcaagaagacgaggcccagaatgaccccacga
ccttctcccagccccatgattgagagcacgcccatgtccctcgctggagacgccacaccg
ctgctggatgagatggatcgctag
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integrated database retrieval system
