Oncorhynchus nerka (sockeye salmon): 115141838
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Entry
115141838 CDS
T07952
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03030
DNA replication
one03420
Nucleotide excision repair
one03430
Mismatch repair
one03440
Homologous recombination
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
115141838
03420 Nucleotide excision repair
115141838
03430 Mismatch repair
115141838
03440 Homologous recombination
115141838
03460 Fanconi anemia pathway
115141838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115141838
03032 DNA replication proteins [BR:
one03032
]
115141838
03400 DNA repair and recombination proteins [BR:
one03400
]
115141838
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
115141838
DNA replication proteins [BR:
one03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
115141838
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
115141838
MMR (mismatch excision repair)
115141838
DSBR (double strand breaks repair)
HR (homologous recombination)
115141838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
115141838
NCBI-ProteinID:
XP_029536945
LinkDB
All DBs
Position
LG14:40729176..40778424
Genome browser
AA seq
607 aa
AA seq
DB search
MNNMLTKGAIEDLTKGSNNLPNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNSMAEDNRLAPNCICQLKRNVTNVLKDGRHVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGNYGTMNKGPSREFGGKKAMPLPAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFISIADL
EAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSGKLVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGNTNWKTLTDIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCSKKV
VDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQL
KDSNEAAFEEIFQQANFHTFIFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNI
RKMAATQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaataacatgctgacaaagggagctatagaggatttaaccaaaggctctaataattta
ccgaaccccattcttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacagcactcaatgtcctcgttcatgctctccacc
caactcaactcaatggctgaggacaaccgactggccccaaactgtatctgtcagctgaag
aggaatgtgaccaatgtcctaaaggatggacggcatgtggtggtcatattagacatggag
gtggtgaagtctgctgatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggtcagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagccccag
aatggaaattatggcaccatgaacaaaggtcccagcagggagtttggggggaagaaggcc
atgcctctgcctgcaatgcccagcactcctgggggatcctccaaagtcgtgcccattgcc
agcctcaacccctaccagtcaaagtggaccatccgagcacgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggatggcaagctgttctctatggagattgtggat
gaaagtggagagatcagagtgactgcctttacccaggaggtggacaagttctacagcatc
atcgagactggcaaggtgttctacatctccaagggatcactgaagatcgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctaaatggagaatccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcatctccatcgctgacctg
gaggcccgagaaaaggacgccattttggatgtgattggagtgtgtaagagcgtggctgac
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaactggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggatctgggcagcccatcttggccatcaaaggggccaagctgtcggactatgggggaaga
tctctgtctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggagggccactctatggatggccagtctctgacggag
gcgaggacaggtggaggaggagggaacaccaactggaagaccctgactgacatcaagacg
gagcacctcggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtac
atccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcagtaagaaggtg
gtggaccagcaaaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttc
aagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacc
tgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctagggcaactc
aaagactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttc
atcttccgcaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacg
gtgatggaggtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatc
aggaagatggctgccacccaataa
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