Oncorhynchus nerka (sockeye salmon): 115141871
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Entry
115141871 CDS
T07952
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115141871
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
115141871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
115141871
NCBI-ProteinID:
XP_029537052
LinkDB
All DBs
Position
LG14:complement(42391374..42427430)
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AA seq
2119 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWRRFVWQGPTSSPILFPVTEEDPILCSFSRC
LAADVLSVWRRHHTPGRRELWLFWWGDDPSFAELIHHELSSEEDGEWESGLSYECRTLLF
KAVHNLLERCLMNRSFVRIGKWFVKPYEKDEKPVNKSEHLSCAFTFFLHGDSNVCTSVEI
AQHQPVQRLGEEHLSLAQQNASPLQVILSPYGLNGTVTGQSFKMSDHPTQKLIEEWRQFY
PISPSSKDRPDDKMEDADWEDDSLAAVEVLVAGVRMVYPACLVLVPQSDLPALAPQGSAN
PSPVLCEGLGAHRDPAMSSVTLTPPTSPEEAQTDSQAAQRWLKLCSTVDGFSSKSSGIHG
SKIPRRLAAQVVESVWQECTTNRAQNKRKFATLTNGTCEEEVDKTGVWDFVEFSHRAHCN
CSRHKNQKQRSGSTSGNPPSVGQPSQPLPKHKLGEKLEKGEKQQKRPQTPFHHRSYVFEE
QAMEPQRLCMRTQDEGPYPSLHHVDTAPSKAPMLHTHRPLQDLASSPQPPPLSPHPCERG
EEDPGAMKSSSTPIHQHFYPPSSEPCLLPQKTSPDEPHLEPLPLPFPPAYPDSLEPTVYV
GSAINPNEDSAHNPWKYFNLPRKKTSDFFTPLLPVDKLQDDSGEGGQENIVSVTELMSGS
GRPLKVSEDLVRTYTQRRNSHLVAAMADEDQEEEPDPYAFVEGDEEFTFTDKKDKPGSDR
ETSKRHKGDDGSGTSADDGQGAAGGKPVPSTSLIHETDLAVSINDLDNLFNSDEDELAQP
GSRRAGVHGDKFGSKEHKTSNLDPLSCISSADLHKMFPTPPSLEQHIMGYSPMNTGGKDY
GGLEAGGGLTLLDGSQFSSHYKMEVEEGFCSPKPSEIKDFSFVYKSEACKAFTGCSMFAP
LKMLPSQCMMPIKLPEDCVYTPSWNMGKLELIPPVPTMGLLTKDGNIPSVEPDYQSYTPQ
THTPFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPSSVQGSLKYDNSDLY
SPASTPSTCRPLSSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCVCVCNMNI
RGADVGVYLNDNGEAQYPCTCGFSAVVNRRYGSSAGLFLEDELDVVGRGSDAGRDSERRF
QELRAASLHRTGNPTERPPDELILLLQDQCTNPFSRMAGVEYPKALSSGPSHSSLRVEER
DCYNDCYMALEHGRQFMDNMSGGKVDEVLVKSTCLHNWPKRKTAEVSRLFSQDVLRVLLS
LQPVLQDAIQKKRSVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGYEYDF
VVLSPFGLPYWEKLLLDPFGSHRDVGYVVICPENEALLRGAKSFFKDLTAAYEACRLGQH
RPICKTHADGILRVGTAEGRNRAEQPLSDWFLKMASSNGNSEAFNKLKLYAQVCRHDLAP
YLAGQSLDSSLLNQRGPTVASTQSSSSQSPSSTTPPSGPQSSTSSSTAQPANTNSTPPSS
TGPQAVGGIGGVGMPSAKPSSYTPYGTSGLQGNVSQNGPQSCPQTAGENGPTANQPQAST
EPVETTLERDKVGVPTDGESHAVTFPPSIVVYIVDPFSYEDGERDTHSSVWTLGLLRCYV
EMLQFLPPHIRNCVSVQIIPCQYLLQPVRIEERHLYGQHLKSLAFSVFTQCRRPLPGNTN
IKALTGFGPGLAIDMALRSTERPECLRLYTPPFILAPIKDKQTELGETFGEASQKYNVLF
VGYCLSHDQRWLLASCTDQSGELLETCIISIDVPNRARRKKGSARRLGLQKLWEWCLGLV
QVTSLPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSKRLKETCRMCGISAADTPSILS
ACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPTSAMVQV
NNGTTEQNLDIAFNPINPDGSDGMGIFDLFDNDMVDPDLINILPNSPTTSPVHSPGGHYH
QGGDGSKGQSTDRMESHEEALNILQQPMALGYFISTAKAGPLPDWFWSACPQAQNQCPLF
LKASLHLHVSSVQSDELLHSKHSHPLDSNHTSDVLRFVLEQYNALSWLTCDPATQDRRSC
LPVHFVVLNQMYNFIMNML
NT seq
6360 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatgttttgtaccaaacggggccagtttggaggactgccactccaacctattt
tgcctggctgacctgactgggataaaatggcggcgttttgtgtggcaggggcccacttcc
tcgcccatcctgttccctgtgacggaggaggaccccatcctgtgcagcttcagccggtgc
ctggcggccgatgtgctaagcgtgtggcgaaggcaccacaccccgggtcgccgcgagctc
tggctcttctggtggggggatgaccccagcttcgcagagctcatccaccacgagctgtca
agtgaggaggacggcgagtgggagagtggcttgtcctatgagtgccgtacactcctgttc
aaagctgtccataacctgttggagcgttgcctcatgaaccgcagctttgtccgtattggc
aagtggtttgtcaagccctacgagaaggatgagaagcccgtcaataagagtgagcacttg
tcgtgtgcgttcacctttttcctgcacggggacagtaacgtgtgcaccagcgtggagatt
gcccagcaccagcctgtccagaggctaggtgaagaacatctgagcctggcacaacaaaat
gccagccccctgcaagtcatcttgagtccatacggtctgaacgggacggtcacgggccag
tccttcaagatgtctgaccaccccacccagaaacttattgaggagtggaggcagttctat
cccatcagccccagctccaaggaccgccccgatgacaagatggaggatgcagactgggag
gacgactcactagcagccgtggaggtccttgttgctggagttaggatggtgtaccctgct
tgtctagtactggtgccccagtcagacctccctgcactggccccacagggatcagccaac
ccctcacccgtcctgtgtgagggcctgggggcccacagagaccctgccatgtcctctgtc
acccttacccctcccacatcaccggaggaggcccaaacagattctcaggcagcacagagg
tggttgaagctctgctcgacagtggatggtttcagctccaaaagcagcggtatccacggc
agcaagatcccccgcaggctggctgcccaggtggtggagagcgtgtggcaggagtgcact
accaaccgggcccagaacaagaggaagtttgctacattgaccaatggtacctgtgaggag
gaggtggacaaaacaggagtgtgggattttgtggagttctcgcatagggcacactgcaac
tgctcaaggcataaaaaccagaagcaacgatcaggcagcacctcaggaaaccccccgtcg
gtgggccagccctcacagccgctgcccaaacacaagctgggcgagaagctggagaagggg
gagaagcagcagaagaggccccagacacccttccaccaccgcagctatgtgtttgaggag
caggccatggagccccagaggctgtgtatgagaacccaggatgagggcccctaccccagc
ctgcaccacgtggacacggccccttccaaagcccccatgttgcacacccacaggcccctc
caagacctggccagctccccccagccccctcctctcagcccccacccctgcgagcgcggg
gaggaagaccctggggccatgaagagctcctccacgcccatccaccaacacttctacccc
ccctcctccgagccctgcctgcttccccaaaagacctcgcctgacgagccccacctggag
cccctgcctctgcctttcccacctgcctaccctgattccctggaacccactgtctatgtg
ggatcagccatcaaccccaacgaagactcggcccacaacccctggaaatacttcaacctg
ccacggaagaagacctccgacttcttcacaccactgttgccagtggacaaactacaggac
gactctggggaaggagggcaagagaacattgtctctgtcacagaattgatgtctggctct
ggcaggcctctgaaggtgtctgaagacctggtgaggacctacacccagaggaggaacagc
cacctggtggctgccatggctgacgaggatcaggaggaggagccagacccctacgccttc
gtggaaggagacgaggagttcactttcactgacaagaaggacaaacctggctcggacaga
gagaccagcaagagacacaagggtgacgatggcagtggaacctcagcagatgatggtcag
ggtgcagctggtggaaagcctgtaccctccaccagccttatccatgagacagacctggct
gtgtccatcaacgacctggacaacctcttcaactcagacgaagacgagctagcgcagcct
ggatccaggagagcaggagttcatggagacaagtttggcagtaaggaacacaaaacatca
aatctggaccctctgtcctgcataagctcagctgacctgcacaagatgttccccacccct
ccctccctggagcagcacatcatgggctactcccccatgaacactgggggcaaggactac
ggtggcctggaggccggggggggcctcactctgctggatgggagccagtttagcagccac
tacaagatggaggtggaggaaggtttctgcagccccaagccctctgagatcaaggacttc
tcgtttgtttataagtcagaggcgtgcaaggcattcacgggctgctccatgtttgctccg
ctgaagatgcttcccagtcagtgtatgatgcccatcaagctgccagaggactgtgtttac
acacccagctggaacatgggcaaactggagctcataccccctgtgccaaccatgggcctc
ctcaccaaagacggtaacatccccagtgtggagccagactaccagagctacacaccacag
acccacactcccttcatgtccaacagtgccccacccagcaacagcggcacgggcatcctg
ccctccccggccacaccccgcttctccgcccccaccccacgcactccccgtaccccacgc
accccaagagggccttccagtgtccagggatcgctcaaatacgacaactctgacctctac
tcgcctgcctccaccccttctacttgccgacctctcagctcagtggagccagccactgtg
ccctccatccctgaggcccacagcctctacgtcaccctcatcctctctgagtccgtcatg
aacctcttcaaggactgtaactttgacagctgctgcgtgtgcgtgtgcaacatgaacatc
cgtggcgctgatgtgggcgtgtatcttaacgacaacggcgaggcccagtacccctgcact
tgtggtttcagcgctgtggtcaaccgtcgctacggcagctcggccggtctcttcctggag
gatgagctggatgtggtggggcgtggctcggacgccggccgggactctgagaggcgtttc
caggagctgcgcgctgcctcccttcacaggaccggcaaccccaccgagaggcccccagac
gagctcatcctgttgctgcaggatcagtgcaccaacccattctcccgcatggctggagtg
gagtaccccaaggcgttgtcctccggcccctctcactcttctctacgggtagaggagagg
gactgctataacgactgctacatggctctggagcatggccggcagttcatggacaacatg
tcaggaggcaaggtggacgaggtgctggttaagagcacgtgtctacacaactggcctaaa
cgcaaaactgcagaagtgagcaggctgttctctcaggacgtgctgcgggtgctgctctcc
cttcagcctgtactccaagatgccatccagaagaagagaagcgtacgttcctggggcgtt
cagggacctctcacctggcagcagtttcacaagatggccggcaggggatcctacggcact
gacgagtctccagagcccctccccatccctaccttcctggtggggtatgagtatgacttt
gtggtgctgtcgcccttcggcctgccttactgggaaaagctgctgctggaccccttcggc
tcccacagggacgtgggatatgtagtcatctgtcccgagaatgaggctctgctccgtggg
gctaagagcttcttcaaggatcttacggccgcgtacgaagcctgtcgactgggtcagcac
agaccaatctgtaagactcacgcagatggaatattgcgggttggtacagcagagggcagg
aaccgggcagagcagcctctcagtgactggttcctcaagatggccagcagcaacggaaac
agcgaagccttcaacaaactcaaactgtatgcccaagtgtgccggcatgacctggctcca
tacctggctggacagtctctggacagctctctgttaaaccagcgtggccccactgtggcc
tctactcagtcctcctcctcccagtcccccagctccaccacccccccctcaggtccccag
agctccaccagcagcagcactgcccagcctgccaacaccaacagcaccccaccctcctcc
acaggcccccaggcagtgggagggatagggggagtaggaatgccgtcggccaagcccagc
tcctacacaccatacgggacatcaggcctgcagggcaacgtctcccagaatgggccccag
tcgtgtcctcagactgcaggggagaatggccccactgccaaccagccccaggccagtact
gagcccgtagagaccacattggagagagacaaggtgggcgtccctacagacggagagtcc
catgctgtgacgtttccgccgtccattgtggtttacatcgtggaccccttcagctacgag
gacggggagagggacacccactccagtgtgtggacactgggtctgctgcgctgctatgtt
gagatgctccagttcctgccgcctcacatcagaaactgtgtgtctgtgcagatcattccc
tgtcagtacctgttgcagcctgtgcgcattgaggagcgccatctgtacggtcagcacctc
aagtccctggccttctcagtgttcacgcagtgcagacggcccctccccggcaacaccaac
atcaaggctctgacgggcttcggcccaggcctggccattgacatggcactgaggagcaca
gagaggccagaatgtctgcgtctgtacacaccaccgttcatcctggcacccatcaaggac
aagcagacagagctaggggagacgtttggtgaggcctctcagaagtacaatgtgctgttt
gtgggctactgcctgtcgcatgaccagcgctggctcctggcctcctgtactgaccaatca
ggagagcttctggagacatgcatcatcagcatcgacgtgcctaacagggctcggaggaaa
aagggctcagccagacgactgggcctgcagaagctgtgggagtggtgtctaggcttggtg
caggtgacatcactgccctggagggtggtgattggccgtctgggcagaatgggccacgga
gagttacgagattggagtattctactgagtagaaggaacctgcagtctctcagcaagcgc
ctcaaggagacctgcaggatgtgtggcatctctgccgcagacacacccagcatcctcagc
gcctgcctggtcgccatggagcctcaaggctcctttgtcatcatgccagactctgtgtcg
acaggctcagtgtttggccgcagcaccactctgaacatgcagacgtcccagctgagcact
cctcaagacacgtcctgcacccacatcctggtgttccccacctcggccatggtgcaggtg
aacaacggcaccaccgaacagaacctagacatcgccttcaaccccataaaccctgatggt
tcagatgggatgggcatctttgacctgtttgataacgacatggtggaccctgacctcatc
aacatcctgcctaactcccccaccacctcccctgttcactccccgggtggacactatcac
caggggggagacggcagcaagggccaaagcacagaccgtatggagtcccatgaggaggcc
ctgaacatcctgcagcagcctatggctctgggctacttcatctccactgccaaggctggc
cccctacctgactggttctggtcagcctgcccccaggcacagaaccagtgcccactgttc
ctcaaggcctccctgcacctccacgtgtcctcggtccaatcagacgagctcctccacagc
aaacactcccaccctctggactccaaccacacctcagatgtgctcaggtttgtgctggag
cagtacaacgccctctcctggctgacgtgtgaccctgccactcaggaccggcgctcctgt
ctgcctgttcactttgtggtgctcaaccagatgtacaactttatcatgaacatgctctga
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integrated database retrieval system
