Oncorhynchus nerka (sockeye salmon): 115142191
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Entry
115142191 CDS
T07952
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like isoform X1
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
115142191
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115142191
Transporters [BR:
one02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
115142191
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
115142191
NCBI-ProteinID:
XP_029537516
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Position
LG2:complement(49560296..49579774)
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AA seq
645 aa
AA seq
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MEKHNDPDISFNKMAHQEMGLVQPVSVAKTQTRGQWSSKLEFLLAVAGQIIGLGNVWRFP
YLCYKNGGGVFFIPYVLFLFTCGIPLFLLETSLGQYTTQGSITCWRKICPLFEGLGYGGQ
VVVLYSSIYYIIILAWAFFYLFSSFSSELPWASCRNSWNTATCVEFDRRVVGYLNWTITG
NATSPVREFWERRVLNLTDSVYKLGNIRWDLSLCLLLSWIICYFCVWKGVKSTGKVVYFT
ATFPYVMLLVLLVRGLTLPGAIDGIKFYLYPDPARLADPQVWMDAGTQIFYSYAICIGCL
TALGSYNKYDNNCYKDCMYLCLLNSGTSFVAGFSIFSVLGFMAYEQGTDIATVAESGPGL
AFIAYPRAVAMMPVPQLWAIFFFIMIILLGLDSQFVGLEALMTAISDMYPSFFLVGHRRK
ILLLIISVGSFFIGLVMVTEGGLYIFQLFDYYACSGMTLLLFAVLQSVCVSWVYGADRLY
DNIEDMIGYRPLPLIKYCLKYITPVICTATFVFSLIRFTPLKFNNTFEYTWWGYAIGWWF
TLSSTLMVPLWMVYIVSVTPGTLRQRLSILTTPSEDLPITKAQKKALLAKQSELDRPLGD
MKIPAWGHNLIDRDTLSLAHHPYRPGDKQVQPVTHSPKGCDTVTV
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcataatgatcccgatataagtttcaataagatggcccaccaggagatgggt
ctggtccagcctgtctctgtggccaaaacccagaccaggggacagtggtccagcaagctg
gagttcctcctggctgtggccggacagatcatcggcctggggaatgtatggaggttccca
tacctgtgctacaaaaatgggggaggggtgttcttcatcccttatgtgcttttcctgttc
acctgtggcatccccctctttcttctggagacctccctgggccagtacaccacgcagggc
agcatcacctgctggaggaagatctgccccctgtttgaaggactgggttatggtggtcag
gtggtagttctgtattccagcatctattacatcatcatcctggcctgggccttcttctac
ctcttctcctcgttcagctctgagctcccctgggccagttgtagaaacagctggaacaca
gcaacctgcgtggagtttgacagaagagtagtaggatatctaaactggacaataacagga
aacgcaacatcgccagtgagagagttctgggagagaagagttttgaatctcacagacagt
gtctacaagcttggaaatattcgctgggacctatctttgtgtcttctattgtcctggatt
atctgttacttctgtgtctggaaaggagtgaagtctactgggaaggtggtctatttcact
gccaccttcccctatgtgatgctgttggtattgctagttcgtggactcacactgccaggg
gccatagatggcatcaagttctacctctacccagatccagcccgcctcgctgacccacag
gtgtggatggatgctggaacacaaatcttctactcctatgcgatctgcatcggctgcctg
accgcccttggcagctataacaagtatgacaacaactgttacaaggactgtatgtacctg
tgccttttgaacagcggaaccagcttcgtggctggtttttctatcttctctgtactgggc
ttcatggcttatgaacaggggacagacatcgcaaccgtggccgaatcaggtcctggcctg
gcgttcatcgcctaccctcgtgctgtggccatgatgccagtaccccaactctgggccatt
tttttcttcatcatgatcatcctactggggttagatagtcagttcgtaggtctggaggct
ctgatgacagctatctcagacatgtatccctccttcttcctggttggtcatcggcgtaaa
atactcctcctcatcatcagtgtgggtagcttctttatcggcctggtcatggtcacagag
ggaggcctgtatatcttccagctgtttgattactatgcctgcagtgggatgactctcctt
ctcttcgctgtactacagtcagtgtgtgtcagctgggtttatggtgcagatcgtctgtac
gataatatagaggacatgatcggttatcgaccattacccctcattaagtactgtttgaag
tatatcactccagtcatctgcactgctacgtttgtcttctccttgattaggtttaccccg
ctaaagttcaacaacacctttgagtatacttggtggggttacgccattggctggtggttc
accctctcctccacactcatggttcctctgtggatggtgtacattgtgagtgtcactcct
ggtacactgcgacagagactgtctatcctcaccacgccctcagaggatctccctattacc
aaggcccagaaaaaggccctcctggccaagcagtccgagctggacagacctctgggggac
atgaagataccagcctggggccacaatctcatagacagagatactctctcgctcgcccac
catccctacaggcctggagacaagcaggttcagccagtcactcactctcctaaaggttgt
gacactgtgactgtgtga
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