Oncorhynchus nerka (sockeye salmon): 115142319 Help Entry 115142319         CDS       T07952                                  Name (RefSeq) collagen alpha-1(VII) chain-like   KO K16628   collagen type VII alpha Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one04382   Cornified envelope formation Brite KEGG Orthology (KO) [BR:one00001]  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     115142319 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen fn3 VWA VWA_2 Kunitz_BPTI Pur_ac_phosph_N Ig_DSCAM-DSCAML_C DUF4992 VWA_3 fn3_2 Motif Other DBs NCBI-GeneID:  115142319 NCBI-ProteinID:  XP_029537585 LinkDB All DBs Position LG15:35291655..35386002 Genome browser AA seq 2866 aa AA seqDB search MKMWCWVFPLAFLLSSVHQAEAQGRCNNVGPADIVFLIDGSSSIGRANFLQVKGFMAGII KPFTSSVGQSGIRFGVVQYSDTSRVEFTFTTYLNGTELVSAVENLNYKGGNTRTGAGLKF VADNFFNPTSIRNVSKVCILITDGKSQDSVSDPAQKLRSLGVEMFAVGIKSADQTELALI ATPPQRDYTFFVGDFKLLNTLLSLVGPRVCSSSGGVYASDDAFSGPSNLQFSSQTSDSLR FRWTPAGGPVTGYVVQYTPLSGLGQPITAELRQETVSASQRSFVARELKSGTDYLVTVIA QYPNSVGEPVSAKARTNSLPGVSGLRLVQAGFFSLSLTWDAPTSQFQGYRLTYGPRGQPK AQLLEQSLAADSTSVTLERLLPDTEYVLTLYPLFPRNSASPATLTSRTLRLEAAQQLSVD TVSERSVRVLWRGVGGARAYRLVWGPFTGRDVESVEVAGDSETHTLLNLQPDTEYIVTVI ALYEGNTEGPGATTRFKIERLEQQVLRAATTGPSSIRLTWNYIQSARGYRLEWRQGEGGR MQSQSFSRNTTIYDLSGLQPSTEYVITLFTLYEGREEATPVSTSPTAQTEETRSIPGSQT TLDLRGLTEGVSYGVSVTAVVGDSEGDPVTVYIKSEQALERVTNLRVTNTNGRRLRIAWT GVSGATGYRVTWRQGNNAEQSRVLGPEASSYTVEGLQPDTAVVLGVAAVIGQRIGEVVTL SARTNGNNGSSTVSGLRIIDATSQRIRITWSPVSRATGYKITWRSGNGVESSRTVAADVT SFTIDSLQEDSSYRVSVSSLIGSREGYPTSLNTRTESDQLVVGTVTSLKAQESRGEVVRV TWVGVQGATAYRVAWKRIDGGEERSQLVGGDLTAVDLEQLDPGAQYEVQVMALVQNREGS PVSVRVTTPGEPVAVDRVEGVRVLEATPRVLRLVWRGMAGVTGYRLYWRSALGEAESSRL IRRDATSFDLDGLRPGVSYTMRLAAIFRDRESQAVTITASTAPLQPVTGLRVAEVTQNSV LLGWVPLTGATGYILRWKEERDTGPGQSTTLPGSSSSYRVTGLRLGLRYRFTLQPNFQRE VGPETSVDERTVCVGGRLDVVFLVPASRGRASLADSLLSLLTSAAGSLTTIGERDSQLGI VVYSARPKVWFLLNRHSNSETLLQEILSTPFEDGPGNAIGQAMTFTRQFLLSPTAGRRPR VPGAVVIIADEKSSDNITVPASVVKASGVTVLAVGIGRADSEELRQAVTDGSTQNILYAR DATQLGTLHADLADLLCGVARIPEGVGPVTEQCTVQCPRGDRGERGGKGESGRDGADGRK GEPGRDGLPGREGPRGPEGRQGQPGRSEDPSVGVRGEKGERGFPGLDGNPGLPGRPGTPG PGGVPGSQGLSGVRGDPGDPGVTGTPGTKGDRGDRGEPGSAVSGGGLPGRKGEPGIPGIP GTLGRPGNDGAKGFVGPAGTPGQDGRPGIPGTPGLSIKGDKGSTGERGPPGVGSGLAVKG EKGSLGSNGNPGAQGLRGSTGQQGAKGDKGESAEGLPGLSGKAGEPGDRGPRGPAGSIGL KGDRGQPGEPGSQGDRGERGLAGLAAERGESGQPGSTGAPGLRGLPGTSGLPGEKGSEGA KGEPGRSGPGLGGKKGEQGEPGLPGPEGPRGQKGDPAQKGEKGSPGTGSPGQAGSKGEQG DRGLSGLAGRLGIKGDSGEPGERGETGRAGPAGKNGIPGKEGAKGDKGDEGTPGESGLPG KAGERGLRGLAGQSGRAGEKGDLGDPGEHGRNGSPGPIGPRGEKGVEGAQGRPGPPGKVG DTEQKLKGERGEKGDAGDPGEHGGKGQKGEAGSSGAAGLRGLEGQRGPPGSRGDTGERGG PGEKGERGASGLDGRNGLDGKPGAPGAAGLRGDPGKLGDPGRDGLPGLRGVQGLPGPIGP AGNTGTPGKAGEDGKPGAAGKMGEDGVPGEDGRKGDKGEAGKNGLGGSVGPPGPKGAAAV AGESGLPGARGLPGVTGPKGEPGASGPQGSKGDRGIAGLRGDKGDRGPSGEQGRDGFQGT AGEPGKPGQDGKPQGPQGPAGPQGRSGNPGEPGIRGPTGPIGTNGPPGPSGVKGNQGVPG VGVQGLPGPEGNMGVRGPAGPPGAVGPSGPPGLPGQTGEGGKPGVPGRDGIPGKEGTPGL PGKQGIAGPMGSAGLKGELGDSGPPGKAVAGPPGMKGAQGPTGATLPGTVGESGLPGLRG ERGDKGPAGIKGDRGAAGENGEPGEDGGRGPAGPKGDRGERGIGLAGPPGQLGPQGLNGD TGLPGPAGPPGAQGVAGTPGLAGLRGENGTPGPPGPLGPRGIQGFTGQTGTPGAPGPPGP PGLAGSPGTAGGKGDKGAIGAGVPGLRGERGDPGPRGEEGRGGQNGERGLAGSPGGKGGR GDKGELGLQGGKGEKGDTLLVGGPTGEKGNKGETGDRGPKGVQGEKGLKGNDGPAGEQGL RGEPGDRGSTGFQGARGPGGQKGEAGQPGVPGESGTPGKDGMPGFRGDKGDVGITGMRGI KGDRGSKGACGSDGPKGEKGDSGIHGRSGLPGRKGEQGDLGPPGAIGTPGKEGLIGPKGD RGIDGVLGPKGTQGEKGERGPSGIPGPPGPTGVDGASGLTGPQGPAGAKGPEGLQGQKGE RGPIGPAKIGPRGIPGIPGERGGQGELGLDGAKGDRGEPGLTEDEIRAYVRTEMSQHCAC GGIVVTETLPSPRVRPAPEQQLARKGKQGKDGRELRVVVNTNDPDYEHFYSIESYDEPMA MEQSIHLTPTANQSHGERVTVDPLKTKRPRREVKGEAPADPCVLPLEEGNCWRFTLRWYF NSQVQACRPFIYSGCEGNANRFLQQETCEERCLGEVTGAIPLKKGR NT seq 8601 nt NT seq  +upstreamnt  +downstreamnt atgaagatgtggtgctgggttttccccctggcgttcctgctgtcctcagtgcaccaggct gaagcccaaggcaggtgtaataatgttggaccagcagacatagtgttcctgatagatggc tcatccagtatcggcagggccaacttcctgcaggtcaagggcttcatggccggtatcatc aagcccttcaccagctccgtgggccaatcagggatccgcttcggcgttgtgcagtacagc gacacctcaagagtggagttcaccttcaccacatacctgaatggcacagagctggtcagc gctgtggagaacctcaactataagggaggcaacactcgcaccggtgctggcctcaaattt gtcgctgacaacttcttcaaccccacttccatccggaacgtctcaaaggtctgtatactg atcacagatgggaagtctcaagacagtgtaagcgacccagctcagaagctacggagtctg ggagtggagatgtttgcagtgggtataaagagtgcagaccagactgagttggctctgata gccactcctcctcagagagactacacattctttgtgggggactttaagttgcttaacaca ctgctctccctggtgggcccgcgtgtttgttccagctctggtggagtgtacgctagcgat gatgccttctccggtccctctaacctccagttctcaagccagacctctgattcgctcagg ttccggtggactcccgcaggggggcctgtgacgggctatgtggtgcagtacactcccctc tctggccttggccagccaatcacagcggagctgcgtcaggagacggtgtctgcaagtcag aggagcttcgtggctagagagctgaagtcagggacagactacctggtgacggtcatcgcc cagtatcccaacagtgtgggagagcctgtgtccgccaaggcaagaaccaactcgcttccg ggggtgtccggtcttcgtctggtccaggctggtttcttctccctctcgctgacctgggac gctcccacctcacagttccagggctaccgactcacctatggtccccgaggtcagcccaag gcccagctattggagcagtctctggctgcagactctacttctgtcaccctggagaggcta ctgcccgacacagagtacgtcctcaccctctacccgctgttcccccgaaactctgcctcc cccgccaccctcacctcacggacattgcgtctagaagcggcccagcagctgtcagtggat actgtgtcagagcgtagtgtccgggtgttgtggagaggagtgggtggagccagggcctac agactggtctggggaccattcactggtcgtgatgtggaatctgtggaggtggctggtgac agtgagactcacaccctgttgaacctgcagccagacactgagtacattgtcactgtcatt gctctctacgaaggcaacacagagggtcctggtgcgaccaccaggttcaagatagagcgt ctggagcagcaggtgctgagggcagccaccaccgggccctcctccatccgcctcacctgg aactacatccagtctgccaggggataccgcctggagtggaggcagggggaaggtggcaga atgcagagtcagtcattctccaggaacaccactatttatgatctgtcagggctgcagccc agcactgagtatgtcatcaccttgttcaccctgtatgagggacgagaagaggccaccccc gtctccacctctcccacagcgcaaacagaggaaacccgcagtatccctggaagccagacg acccttgaccttaggggtctgacagagggcgtgtcttatggggtcagcgtgacagctgtg gtgggagacagcgagggggacccagtcactgtctacatcaaatcagaacaagcattggag agagtgacaaacctgcgtgtgacaaacaccaatggtcggcgactccgaatcgcctggaca ggggtttccggggcgacagggtacagggtcacttggagacaaggcaacaatgcggagcag tcccgtgttctggggccagaggcctcgtcctacacggtggaggggctgcagccagacaca gctgtggtcctgggcgtggcggctgtgattggtcaacgtatcggggaggtggtcaccctc tcggccaggaccaatggcaacaacggctcaagcacggttagcggcctgcgtatcattgat gccacctctcagaggatacgcatcacatggtcaccagtctccagggcaactggctacaag attacctggcgcagtggaaatggagtggagtcctcccgcacggtggccgctgatgtcact tccttcaccatcgacagccttcaggaagactcctcctaccgggtctcagtctcctcactg attgggtctcgggaaggataccccacctccctgaacaccagaacagagtcagaccagttg gtggtgggaacagtgacttcactcaaagcccaagagtcccgcggtgaggtcgtcagagta acatgggtgggcgtgcagggagcgacagcctatcgtgtggcttggaagcgaattgacggt ggggaggagaggagtcagctggtaggtggtgacctcacagcggtggacctggagcagctg gacccaggggctcagtatgaggtgcaggtcatggccctggttcagaacagagagggatcc ccagtctctgtcagagtcacaacacctggggaacctgttgctgtggaccgtgtggaggga gtcagggtgctggaggctaccccaagggtgctgcgtctggtctggagaggaatggctggg gtcacagggtaccgcctctactggagatcagccctgggtgaggctgaatcgagccgtctg atacgccgagatgcgacctcgtttgacctggatggtctgcggcctggggtgagctacaca atgaggctggctgccatcttcagggacagagagagtcaagctgtcactatcacagcctcc acagctcccctacagcctgtaacaggtctgcgtgtggcagaggttacccagaattctgtg ttgttaggctgggttccactgactggtgccacaggatatatcctgcgctggaaagaggag agagatactggtccgggtcaatccaccacgctgcctgggtcatccagctcctacagggtg acagggctacgtctgggcctgagataccgcttcaccctgcagcccaacttccagagggag gtgggccctgagacctcagtggacgaacgcactgtgtgtgtgggtggtcgtctcgacgtg gtattcctggttccagcttccaggggccgggccagcctggctgattctctgctctccctc ctgaccagcgctgctggctccctcaccaccattggagaacgggactcacagctggggatt gtagtgtacagcgcccgacccaaggtctggttcctgctaaatcgccatagcaacagtgag acgctgcttcaggagatcctgtccacgccttttgaggatggcccagggaatgctataggc caggcaatgactttcaccagacagttccttctcagccccacagctggtcgtagacccaga gtccctggtgcggtggtgatcattgcagatgaaaaatcctccgacaacatcactgtccca gccagtgttgtcaaagcctcaggagtgacggtgctggcggtgggtataggtagggcggac tctgaggagctgcgccaggcagtgacagatggcagcacccagaacattctatatgcccgt gatgccacccagctgggcaccctgcacgccgacctggctgacctgctgtgtggcgtcgcc aggataccagagggagtggggccagtgacagagcagtgtaccgtacagtgtcctcggggt gacaggggggagcgaggaggaaagggagagagtggaagagacggtgctgacggacgcaaa ggagagcctggtcgtgatggtttgcctggcagggagggccccagagggcctgaggggcga cagggtcagcctggccgaagtgaggacccctccgtgggggtcagaggggagaagggggag aggggttttcctggtctggatgggaatccagggttgccagggcgaccagggactccaggc cctggaggtgtcccgggttcacaggggctatcgggtgtcagaggagatcctggtgatcct ggggttacaggaacaccagggacaaagggtgacaggggcgacaggggtgagccagggtca gctgtttcaggaggaggtctgcccgggaggaaaggggaaccagggatcccaggaatacca ggtaccctagggcgtccagggaatgacggggccaagggctttgtgggacctgcagggacc cctggacaggatggtcgcccagggataccaggcacccccggcctctccattaagggagac aagggcagcaccggagagaggggacctccaggagtgggcagtggcttggctgtgaagggg gagaagggatcactggggtctaatggaaacccaggagctcagggtctcagaggatctaca ggacaacaaggagccaaaggagacaagggggagagtgcagaggggttgccaggactgtct gggaaggcaggagagcctggtgatcggggtccccgtgggcctgctgggagcattggactc aagggggaccggggccagccaggtgaacctggatcacaaggtgacaggggggagagagga cttgctggcttggcagcggagaggggggagagtggacagccaggctctacaggggctcca ggcctgaggggtttgcctggcaccagtggattaccaggagagaagggcagtgagggcgct aaaggagaacctggccggagtgggccaggattaggtgggaagaaaggtgaacagggtgag ccgggtctgccaggtccagaggggcccaggggccagaagggcgatccagcccagaaaggt gaaaaaggttccccaggtactggctctcctggccaggctggatctaaaggagagcagggg gatcggggactctctggcttagctggaagactggggatcaagggagattcaggtgaacca ggagagagaggggagacaggacgagccggacccgcaggaaagaatggcatcccagggaaa gagggagccaaaggagacaagggtgacgaaggcactcccggggagtctggactcccaggg aaggcaggggagagaggactaaggggccttgcgggtcagtctggacgagcaggagagaag ggagacctgggagaccctggagagcatggacgtaatggcagcccaggacctatcggacca agaggagagaaaggagttgagggagctcaaggccgcccaggacctccagggaaggtgggc gatacagagcaaaagcttaaaggagaaagaggagaaaagggagatgctggtgacccggga gagcatgggggcaaaggtcagaagggcgaggcagggtcctcaggggctgcggggctccgg ggtctcgagggacagcgtggacctccagggtcgagaggtgacacaggagagagaggaggc ccaggagagaagggagagagaggtgcgtctgggctggatggacgcaacggtctggatggc aaaccaggggcaccaggagcggccggcctgaggggagacccagggaaactaggggatcca ggaagagatgggctgccaggactaagaggtgtacagggcctcccaggccctattgggccc gctggaaatacaggcacacctggcaaagcaggagaagatggaaaaccaggggctgctggg aaaatgggtgaggatggcgtaccaggggaagatggcagaaagggtgacaaaggagaggct gggaaaaacgggctaggtggctcagtgggccctcctggaccaaagggtgctgctgcagta gcgggtgaatctggactccccggagcaaggggcctccctggggtcacagggccgaaggga gagcctggcgcctcagggccacagggatccaaaggcgacaggggtattgcagggctccgt ggagataaaggtgatcggggtccatctggagaacagggacgcgatggttttcaggggaca gcaggagaacctggcaaaccgggacaggatgggaagccgcagggtccacaagggccagct ggtcctcaaggtcgctcaggaaaccctggagaacctggaattagagggccaactggtccg atcggtaccaatggacctccaggtccgtcaggagtaaagggtaatcaaggagtgcctggg gttggtgttcagggacttcctggtcccgaaggcaacatgggagtgcgtggacctgcaggg cctcctggagctgtgggtccatctgggcctccgggtctaccagggcagacaggggagggg ggcaagcctggggtcccaggaagagacgggatacctggaaaagagggaacaccagggttg ccagggaaacagggtatcgctggaccaatggggtccgcagggttgaagggggagctgggg gacagtggccccccaggaaaggctgtagcaggaccccctggtatgaaaggagcacaggga cctactggtgcgaccttacctgggacagtgggagagagcgggctgccagggctacggggt gagaggggagacaagggtcctgcaggcatcaaaggggaccggggagctgctggtgaaaat ggggagcctggagaagatgggggcagaggaccagcagggcctaaaggagacaggggagag agaggcatcggactggcagggcctcctggtcagctgggacctcaagggttaaatggggac acaggtctcccgggcccagcaggccctccaggagcccagggcgtagcagggacccctggt ctggccggcctgagaggagagaacggaactccaggacccccaggacctctaggacccagg ggtatccaaggctttactggtcagacagggactcctggagctcctgggccacccggaccc cctggcttagctggttcaccgggcactgctggaggcaaaggggataagggagcgattgga gcgggagtacctggattgagaggcgagagaggagacccaggacccaggggggaggagggt cgaggtggtcagaacggggagagaggactagcgggctctccaggtggcaaaggaggcagg ggagataagggtgaattggggctgcaaggtggcaaaggagaaaagggtgatactctcctg gtgggaggacctacaggagagaaaggaaataaaggagagacgggtgaccgagggcccaaa ggggtgcagggggagaaaggcttgaaaggcaatgacggcccagctggggagcagggtctg aggggtgagccaggagacaggggctctacagggttccagggagccagaggtccaggagga cagaagggagaggcgggacagcctggtgtacctggagaatcaggtaccccaggaaaggat ggaatgccaggctttagaggggataagggagacgtgggaataactggaatgcgtggaatt aagggcgaccgaggatcaaagggggcttgtggatcagacggaccgaaaggagaaaaggga gattcagggatccatgggaggtcagggttgcctggaaggaaaggtgaacagggagacttg gggcctccaggggccattggaacccctggcaaggagggactgatcggccccaagggtgac cgaggcattgatggagtactaggacccaaaggaacgcagggagagaagggcgaaaggggc ccctcgggtatccctggccctccgggccccacaggagtggacggggcctctggactgaca gggcctcaggggcccgctggagctaagggcccagaaggcctccaaggacagaagggggag aggggccctattggtcctgccaagattggtccacgtggtatcccaggtataccaggagaa agaggcgggcagggagagttgggtctagatggagccaagggagacagaggagagccaggc ttgacggaggatgagattcgtgcatacgtccgcacagagatgagccaacactgtgcttgt ggaggtattgttgtgacagaaaccctgcccagccccagggtacgtcctgctccagagcaa cagctggcccggaagggcaagcagggcaaggacgggcgtgagctgcgtgtagtggtgaac accaacgaccccgactacgaacacttctactctatagagagttacgacgaacccatggcc atggagcagagcatccacctgactcccactgccaatcagagccatggtgagagagtcact gttgaccctctgaaaacaaagaggcccaggagagaggtcaaaggggaagctccagcggat ccttgtgtgttgcccctggaggagggcaactgttggagatttactctgcgctggtacttt aacagccaggtccaggcctgccgacccttcatctacagtggctgtgagggcaatgccaac cggttcctccagcaggagacctgtgaggagcgctgcctcggggaggtcacaggtgctatt cctttgaagaaggggcgatga

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