Oncorhynchus nerka (sockeye salmon): 115142385
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Entry
115142385 CDS
T07952
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115142385 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115142385 (taf5)
03036 Chromosome and associated proteins [BR:
one03036
]
115142385 (taf5)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115142385 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
115142385 (taf5)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115142385 (taf5)
STAGA complex
115142385 (taf5)
TFTC complex
115142385 (taf5)
SAGA complex
115142385 (taf5)
SLIK complex
115142385 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
TFIID_NTD2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_Nup120_160
Tricorn_2nd
WD_LRWD1
Beta-prop_WDR19_1st
LisH_PAC1
DUF4431
LisH_TPL
VID27
PROPPIN
Motif
Other DBs
NCBI-GeneID:
115142385
NCBI-ProteinID:
XP_029537650
LinkDB
All DBs
Position
LG15:351353..359129
Genome browser
AA seq
747 aa
AA seq
DB search
MAAVQDGQLNMEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADDSPVSESAGAGSGGVPSVGADGGDANSLLSRVSI
ATPVAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLDCH
RAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEHMK
GNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQI
DAMSGSLAGEGKRDANKAKLFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAYQG
LTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDEKT
ASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTIRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTLFHPNSNYVATGSADRTIR
LWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDSRVLLWDVGHGLMVGELKGHTD
TIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLLGT
YMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatatggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaacatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgattccccggtatccgagtcggcgggagctggatcgggtggc
gtcccaagtgtcggtgctgatgggggggatgccaactctctcctcagccgagtgtcaatc
gccacccccgtcgcacccccggccaccgcacccccaaaagtggtggcagcatcaggtggg
gaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggaccctgtc
ctctacccactctattataacggcctaaagaagtttatagagtctgtcctggactgccac
agagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggagctggtc
tacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgaccaggag
tgttactacgaggaggacctccgcatcctctccagcatgtccaagaaggaacacatgaag
ggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcccgagac
tcctaccagctgttgaagaggcacctgcaggaacgtcagaacaaccagatctggaatatt
atacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagtcagatt
gatgctatgtcgggcagtctggctggggagggcaagagagatgccaacaaagccaagttg
ttctatggtcttctgaaggagccagagatcgaggtacctctggacgatgaggatgaggag
gcagagaacgaggagggcaaacccaagaagaagaaacccaagaaggacagcatgggctcc
aagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctccccgagctg
aaggactctgacaagctggacaagatcatgaacatgaaggaggccacgaagaagattcgt
ctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttaccagggt
ctgacagcggtggatttcacagatgactccagtctgatcgcggggggcttcgctgactcc
accgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgcagcagac
ctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgagaagacg
gccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagcttcagc
cctgacaggaactacctgttgtccagttctgaggacggtacaatcagactgtggagtctg
cagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggacactcag
ttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgtctgtgg
gcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatcacgtgc
acccttttccaccctaactccaactacgtggccacgggttcagctgaccgtaccatccgc
ctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggtcccatt
cattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgacagcagg
gttctactgtgggatgttggtcatggcctgatggtcggagagctgaagggacatactgac
accatctacgccctcaagttcagcagggacggagagatactagcctcaggctcaatggat
aacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggatgacttc
accgcggcaacaggtcacatccatctgccagagaactcccaggagctgttgctaggcact
tacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaacctactgctg
gccgcaggggcctacaacccatga
DBGET
integrated database retrieval system
