Oncorhynchus nerka (sockeye salmon): 115142425
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Entry
115142425 CDS
T07952
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115142425
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
115142425
NCBI-ProteinID:
XP_029537728
LinkDB
All DBs
Position
LG15:1747728..1776833
Genome browser
AA seq
1622 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSGLLSTGGGESTSRSITG
GSSSVLVSSAAAGSVGGAKSGYGGGSVSKSTTITTIESPSLSSGASGASGAAFRSLGASG
ASFGASKTSGSLSVSGGGLMSSSSSSFVTGSSSGGPSSGFVSSSKGTGAGGGGFVTGSSS
GFVSSSKGAGAGVGGDSFVTGSSSGSSSGFASSSGAGIGGGDSSSAKMSAGGLGSVTVST
VTRSNYSSLAGAGSGGVKRGGAQGSTSSAFSYSPTPTERKSMTSTMITRSMGYEGRSSGN
SSPEYTRREYAAESAVASKPTRGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSR
SSSISPPRSPTSTLPIPRKASVETRTMPNSSQSGHYDSATLDSGMPSYVWSGPTAGGYGY
HSNAINRSPTSTLQHSPITLTATGLQNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGI
LTANGVNAQTVYGVQKNVTSTGVSTTTVAPSTPTSDEVFAKEYKFMLLEKENAPVKKETE
RLVMAKDTGKQFSSAATAIAYSEDSLKKEKKKVSSFVETATARTTETNAGSLTKVSTKDK
ATYAEIRKDESGGGLGFWSCCSWLKWLLGILLGLLLLLGLLLGLIALAEEVKRLKARVDA
LEQASSSSSAHSSRLSSSSAINIIDPLESAYMDKTSSPSSTTLLRTDNGINLGVAAGAGP
GSANGPGQDPVALQRAVQQIVRSELQSDTVRATLAHSMKGARGEPGTKGDQGGPGVKGDN
GFPGLPGPPGQMGHSGLEGPRGPKGNAGEAGAEGPPGQKGREGPTGSRGEPGPPGFGEKG
DKGSPGEPGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEAGAPGPKGEKGPAG
PPGNKGEPGEKGPRGTSGDPGQRGPPGPDGANGSKGPAGAPGADGEKGSRGDKGLDGLPG
PRGPAGPPGDSGLPGIPGLQGPPGIPGNPGQPGGKGEAGEPGRIINAAGSSSVAIPGPPG
SPGPTGVSGSPGLSGPVGPAGLPGTPGPRGERGEEGEKGDQGKPGITVQTVETTERRAPV
ASLPGPPGPPGEPGPQGKGPPGPEGPQGVPGVPGVGVPGPRGDKGEPGSFVPNSGTFFAG
PPGPAGPTGLPGPQGYQGDPGQPGLPGVPGDPGVGFPGPQGQPGGPGPEGDSGLPGPQGP
EGPEGQPGPKGEAGVPGAPGIPGYSSGGSSRSSPGAPGPPGPPGRDGPPGSGSGTPDIRQ
YITEYLKSDGVREYMSGPPGPPGVPGPPGDGSVESVDDLASRVIAYIQSGGIASGVPGPP
GPPGAPGGGSTSLNDIISLLQSEEVRRYVIGPPGPAGPPGIPGIPWRGGYGFNTHEVAGR
VLTLMNDAEYRGALGAQGPPGPPGVPGPAGPQGPAGPSGQAPYSSSGYRLEEVKDYIQSG
LRGGMFGPPGPPGPPGPQGHKGEQGNSGYGHAFDHRTSEGRLAETETDFSNIAVRVTDYI
KYHGLLRDVVENRSQLEKAQVVQGPPGPPGPPGAPGFSRVFGSHSNVTDLMEYIRAHGNI
VGPPGRPGQKGDIGHTGHKGERGLDGIPGRAGLPGLEWKRGGKGEKGEYTLVTNRRKRNV
GV
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggtcgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggtggtctctct
tcgaggagcgggctgctctctactggaggaggagagtctaccagtagatccatcacagga
ggcagtagctcagtgctagtatcctctgctgcagccgggtctgtgggtggagctaagtct
gggtacggagggggatccgtcagcaaatcaaccaccattaccactatagagtccccctct
ttatcctccggtgcttcaggagcctctggcgcagcttttcggtctttaggggcttcgggg
gcatcgttcggggcgagcaagaccagcggctctctttccgtttctggagggggtcttatg
tctagctccagttccagttttgtcactggttccagttctggtggtcccagttctggtttt
gtctctagttccaaaggaacaggagcaggaggaggcggttttgtcactggttccagttct
ggttttgtatctagttccaaaggtgcaggagcaggagtaggaggagacagttttgtcact
ggttccagttctggttctagttctggttttgcctctagttctggtgccggaatcggagga
ggggattcttctagtgccaaaatgtcagccggcggcttgggctctgtgaccgtttccacg
gttaccaggtccaactacagctccttagcgggggcgggttcagggggcgtgaagaggggt
ggggcacaggggtctacatcctctgcattcagctactcccccacccccacggagagaaag
agcatgaccagcaccatgatcacccgctccatgggctacgaaggaagatccagtggaaac
tcatctccggaatacacaaggagagaatatgctgcagaaagtgcagttgccagtaaaccc
accagagggcggagccacagcagggagagtgagatcagatgcagactgcagagtgcctct
cccactgctaaaagatggactgaactggatgatgtgaagcggctgctgaaggggagtcgc
tccagcagcatcagcccccctcgctcccccaccagcaccctccctattcccaggaaggcc
agcgtagagaccagaaccatgccaaacagctcccagtcaggccactacgacagtgccacc
ctagactcaggaatgccttcctacgtgtggtcaggccccacggctggaggctatggttac
cacagcaacgccatcaaccgatcccccacctccaccctccaacactcacctatcacactc
acagccacagggcttcagaacaacctggctctcagctctacatccatgaactctggactc
tctgcctctagcactgttcatggtatgcagaataacctggcctccaccactggcggcatc
ctaacagctaatggagtcaacgcacaaacagtctatggtgtgcagaaaaatgtcacaagc
acaggggtgtccacaaccacagtggcacctagcactcctaccagtgacgaggtcttcgcc
aaagaatacaaattcatgctgctggagaaagagaacgctcccgtcaaaaaggagacggag
agactcgtcatggccaaagataccggcaagcagttctcctctgctgccactgctattgcc
tattctgaggactcactgaagaaggagaagaagaaggtgtccagctttgtggagacagct
acagccagaaccacagaaactaacgctggatccttgacgaaagtgtcaacaaaagacaaa
gcaacctatgcagagatacgtaaggacgagtctggaggaggtctgggcttctggtcttgc
tgctcctggttgaagtggctgctgggcatcctgctgggtcttctgctcctcctggggctc
ctcctgggactcatcgccctggccgaagaagtcaaacgtcttaaagctcgtgtggatgcc
ttggaacaagcctccagctcttcctcagcacattctagtcgcctctcctcctcctcagcc
atcaacatcatagaccctctggagtctgcatacatggacaagacctcctctccctcctct
accacactgctccgcactgataatggtatcaatctgggagtggcagcaggagcaggtcca
ggatcagctaacggaccaggccaagaccctgtagctctgcaaagggcagtacagcagata
gtcaggagtgagctgcagtccgatactgtacgagcaacacttgcacactcaatgaaagga
gcgagaggagagcctgggaccaaaggtgaccaaggtggtccaggagtcaaaggtgataac
ggattccctggcctaccaggtcctccaggtcagatgggccacagtggactggagggcccg
aggggccctaaaggaaatgcaggtgaagctggtgcagagggtcccccaggccagaagggc
cgagaaggacccacgggatcacgtggagagcctggtcctccagggtttggagagaaaggg
gacaaaggttctcctggtgaacccggtgggcctggacctgctggcactgctgggcctgtt
gggcctaaagggtcagtgggtggtcagggtgctacaggtatcccaggaactcctggtcca
cagggtttccgaggtgaagcaggcgctccaggaccgaaaggagagaagggaccagctgga
cctccaggaaataagggcgagccaggagagaaaggaccccgcggaacatcaggtgaccca
ggtcaaagaggacctccgggaccagacggcgcaaatggatccaaaggacctgcaggtgct
cccggggctgacggtgaaaaaggctctagaggtgacaagggattggatgggttaccaggt
cccaggggaccagcaggacctccaggagattcaggcctgccaggcattcccgggcttcaa
ggtccaccaggtataccaggtaatcctggtcagcctggaggtaaaggcgaagctggagaa
cctggtagaatcatcaatgcagctggttccagttcggttgccatccccggacctccaggc
agccccggacccactggtgtttccggatcccctggactctcaggtcctgttggccctgct
ggtcttcctgggacgcctggtcccaggggagaaaggggagaggaaggagagaagggagac
cagggaaagcctggtattactgtacagactgtggaaaccacagagagacgtgcacctgtg
gctagtcttcctggccctccagggcccccaggagaaccaggtccccagggtaagggtccc
ccaggtcctgaaggtcctcaaggagttccaggtgtaccaggtgttggtgtgcccggcccc
cgaggagataagggagagccaggtagcttcgtgccaaactcaggaaccttcttcgctggg
cccccaggacctgctggcccaactggcctaccaggaccccagggttaccaaggtgaccca
ggtcagcccggtttaccaggagttccaggagatcccggtgtcggtttccctggaccccag
ggacaacctggaggtccaggaccagaaggggacagtggacttccagggccccaaggtcca
gagggacccgaggggcaaccgggtcctaaaggtgaggctggcgttccaggtgctccaggt
atccctggctactccagtggtggatcatccaggagttcccctggagcaccaggtccacct
ggacctcccgggcgtgatgggccacctgggtctgggtctggaacaccggacatccgccaa
tacatcacagaatacctcaagagcgatggtgtcagggagtacatgtcgggacctccgggt
cctccgggtgtaccggggccccctggtgacggatcagtggagtcagtggacgatcttgct
agtcgcgtcatcgcgtacatccagagtggaggtattgctagtggggtgcctggacctcca
ggcccgcctggcgctcccggtggaggcagtacatcgctaaatgacatcatcagccttcta
cagagtgaggaagtgcgacgctacgtcatcggtcctcctggccctgctggacctcctggc
atcccagggatcccatggagaggaggctatggctttaatacccatgaggtggctggacgg
gtcctcactctaatgaatgatgctgaatacagaggtgccttgggcgctcaggggcctcct
ggtccacctggtgtcccaggccctgctggccctcaaggccctgccggtccttcaggacag
gccccctacagcagctctggatacaggctggaggaggtcaaggactacatacagagtggt
ctaagagggggaatgtttgggcccccaggccccccaggtccccctggacctcagggacac
aagggagagcagggtaactctgggtacggccatgccttcgaccacaggaccagcgaggga
aggctggctgagactgagacagacttctccaatatagcggtccgagtgactgactacatc
aagtaccatggtctgttgagggacgtggttgagaaccggtctcagctggagaaggcacag
gttgttcaaggacccccaggaccccctggccctcccggtgctccaggattcagccgtgtg
tttggttcccatagtaacgtcactgaccttatggaatacatcagagcccatggaaacatt
gtgggaccccctggaaggccgggacagaaaggggacataggacatacaggtcacaaaggc
gagagaggactggatggcatcccaggaagggcaggcctccctggtctggagtggaaaagg
ggggggaagggggagaaaggagaatacacacttgtgaccaacagaagaaagaggaatgtt
ggcgtttga
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