Oncorhynchus nerka (sockeye salmon): 115142458
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Entry
115142458 CDS
T07952
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115142458
03036 Chromosome and associated proteins [BR:
one03036
]
115142458
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115142458
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Gene silencing
piRNA pathway
115142458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
Calcipressin
UBA_NBR1_C
Mei5_like
Motif
Other DBs
NCBI-GeneID:
115142458
NCBI-ProteinID:
XP_029537804
LinkDB
All DBs
Position
LG15:4982204..5068581
Genome browser
AA seq
1990 aa
AA seq
DB search
MEENTNKKQEKTKKEAAQKQAADTKTKVPEPAKPSPGPLHHPTTSVTLPQASHPPSSSSS
VRTNGKRAPPSTQQTPQQLTPPSSSSGPRYPPREVPPRFRQQEHKQLLKRGQPLPAGALS
SLTVTPASDPLISGAPPFSSSAGKRHTDLPFQSGPGAQHENPHWGALPPATDRSSSTTSS
SWDQVIIDGSDTEAWPSISRSSVSRPANPPECATAADCTNPETSSYMSMAAGATSQQAHY
PSSLKANVANVASMMQPSGGQGVGAIGSRGWGSGPGPIPMGPTEGAKPDGLGPNLGRSGG
APSWNSQPSFSLNLNPNANPSAWPVLGQEGAGGGQNPASLPPNGILGNGSLGGDENNSSS
TWGGMMSPDAPSSNKNVSFSSMEHPNLNTDGQNSHHTKQPLSPIHGLPGWGGQSPTESSQ
LNGDAGSSVWGNEDTKTSANSSKNSGWDSAPSGGMSGWGHSGSGGGGSGSGEGGWGGDWG
KHSSGGGEVKGGWDSSDGPAQDQQVSSWGQPTPAPASEGSGSGGSEGRIHRRDQTGSEDG
GPPPLPRQDLDPRVLCNTGWGQTPVRQHTSWEMEEQRAANDRKTSEMRGGGGGDTWRGSN
SPSSGSPPDPRNGGANPSLGPSQRPGSGGPGGKSEGPSGWGGPPPSSWGEQPVNKAPNGS
VSGWGDPMAQGPNTTNNGPKSGGQSWGVPEEKSSPTWDDGPAKTQQNQTQSWGEGPKSSS
QGWGSGHGSGSNGSNGSNGGEWREPAEVKKNGSSSHMWEGGNGRGGGWKDSPRGGGGNGG
GWGSKPAPAVGGWGETQNQHPNGPAPGWGSKPQECPSGAAPGWGSKPQESPSGPAPGWGS
KPQESPSGPAPGWGSKPQESPSGPAPGWGSKPQESPNCNSGGGGPGGGSMGSWGGPASVR
QSSNPGWGPGSSGAKPDPAMEPTGWEEPSPPSIRRKMEIDDGTSTWGDPSAYNKTVNMWD
RNNPTGGNGNQGNNPTQPPTSKSSGGLTVNNSHNNHSSVPPSNNNHHHMNHHHLHHGQPP
PHSQHHGNNNGSPNTAAPHQGSGPQGRTPMANPGWGELPSVQQPKPEPAWGEPAGPSPAV
DNGTSAWGKPPGVPGGWGDGGHEPNGPYRRGNNGPSGPAPCKPALKSMQDGWGGGREEET
GMSSGQWDADAGDVWNSPTSQENNSSCNSWGQPPKKGPPKGKMGNQPDEAWIMNRLIKQL
TDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMSDYNNGMNKPLGCRPQAL
SKDPSSDRSPFLDKDGGLSDDAPPSPFLPSPVSLKLPLINNLQPGLALGSPGLNMHNLNN
RQMQSGMLGSSGAALSRAMQQPPPQPSVPPLGSSQPSLRAQVPQFLTPQVQAQLLQFAAK
NIGLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVAR
TINNMQQQIQQHQRQLYQALLMKQQPPGSHSSSGLHPGQGKSALDSFPGHPQAPGLSDLH
TKEPHSSPSSYSPYPLSGLNPNMNVNCMEVGGLSMKEPPQPQSRLSQWTHPNSMDSLSGN
SSHMEANLNKHGAISAASNLGPPGKPPHMDDSYSPYSMMGGSESPTSPLVPPDSWGQGPG
KSPKDQITNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIQDVNRY
LLRDRSGGSSPPSPPQNGALPPSADWPVSGCYTSSFSLSSPDEESAGKLSDMKSTWSPGP
ISHPSQASLSHELWKVPQGPRNNTAPSRPPPGLTNPAKPSSTWGGNSLGLAQGWSSSYTS
EGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLFLTQGNAVVRYSSK
EEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRYFAQGQQQQLPPTTSWQPNPGTNQTRMG
GGSQQHAIGHHWSGGLGGGAKTGGDLLWGGVPQYSSLWGPPSGDDSRGVIGSPNPINTLL
PGDLLSGESM
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaatacaaataaaaagcaagaaaagaccaagaaggaagctgctcagaaacag
gctgctgacacgaaaaccaaagtgccagagccagctaagcccagccccggtcccctccac
caccccaccaccagtgtgaccctgccccaggcctcacatcccccctcctcctcctcttca
gtcagaaccaatgggaagcgcgccccccctagcacccagcaaacaccacagcagctgacc
cctccgtcgtcgtcctcaggcccccgctacccgccccgtgaggttcccccgcgtttccgc
cagcaggagcacaagcagctactgaagaggggccagccactgccagccggagccctgagt
agcctcaccgtgacccctgcctctgacccgctcatctccggtgccccccctttttcctcc
tccgcaggcaagcgccacacagacctgcccttccagagtggtcctggtgcccagcatgag
aatccccactggggagccttaccaccagccaccgaccgcagcagcagcaccaccagtagt
agctgggatcaagtgatcatcgacgggagcgacaccgaggcctggccctccatcagtcgc
agcagcgtcagccgaccagcgaatcctccagaatgtgccacagccgctgactgtacgaac
ccagagaccagcagctacatgagcatggccgcgggggctactagccagcaggcccactac
ccctcctctctcaaagctaacgtcgctaacgtagctagcatgatgcagcctagcggtggc
cagggagttggagccatcggcagcaggggctggggctccggaccaggccccatccccatg
ggccccactgagggagccaaacctgacggccttgggcccaacttgggtcggagtggagga
gcacccagctggaactcccagcccagctttagcctgaacctgaaccccaacgccaacccc
tcggcctggcccgtgctggggcaagaaggggctggaggtggccagaaccccgcctcacta
ccacccaacggtatcctgggcaatgggagcctgggaggggacgagaacaacagcagcagc
acctggggaggcatgatgagccctgatgccccgtcctccaataagaatgtgtctttcagc
agcatggaacaccccaaccttaacactgacggacaaaacagccaccacactaagcagccc
ctcagccccatccacggcctgcccggctggggaggccagtcccctactgagtcctcccag
ctcaacggagacgcagggagctctgtctggggcaacgaagacaccaagacatccgctaac
tcctccaagaactcaggctgggactcagcaccctccggaggcatgtccggctggggccac
tctggcagcggaggaggcgggagtggcagtggagaaggaggctgggggggagactggggg
aagcactccagcggtggaggagaggtcaaaggaggctgggattcctcagatggcccagcc
caggaccagcaggtgagctcctggggccagccaaccccggccccggctagtgagggtagc
gggagcggtggcagcgaggggcgcatccatcgcagggatcagactggcagcgaggacgga
ggtccccctcccctgcctcggcaggacctggacccccgtgtgctctgcaacacaggctgg
ggccagacgcccgtccgccagcacacctcctgggagatggaggagcagcgtgccgccaac
gataggaagaccagcgagatgaggggaggcggtggaggggacacatggaggggctccaac
agcccctcttctggatccccaccggacccccggaacgggggagccaaccccagcctggga
ccatctcagaggccaggctcagggggccccggaggcaagagtgagggcccttcaggctgg
ggaggccctccaccgtcaagctggggggagcagcctgtcaacaaggcccccaacggttcc
gtcagtggctggggggaccccatggcccaaggccccaataccacaaacaatggcccaaag
agtggaggtcaatcctggggtgtccctgaggagaagtcctcccctacctgggacgacggg
ccagccaagacccagcagaaccaaacccagagctggggagaggggcccaagtcctcctcc
caaggctggggctccggccacggaagtggcagcaatggatccaacggctccaacggcgga
gagtggagagaaccagccgaggtgaagaagaatgggtcctccagccacatgtgggaagga
ggaaatggacgaggaggagggtggaaggacagccccagagggggtggaggaaatgggggc
ggctgggggtcgaagcctgcccctgctgttggtggctggggggagacccagaaccagcat
cccaacggcccagcaccaggatggggctccaagcctcaggaatgccccagcggcgcagca
ccaggatggggctccaagccccaggaaagccccagcggcccagcaccaggatggggctcc
aagccccaggaaagccccagcggcccagcaccaggatggggctccaagccccaggaaagc
cccagcggcccggcaccaggatggggctccaagccccaggaaagccccaactgcaatagt
ggaggaggtggaccaggaggaggcagcatggggtcctggggcggccctgcatctgtaagg
cagagttccaaccccggctggggcccggggagctccggagccaaacccgacccagcgatg
gagcccactggctgggaggaaccctctcctccctccatccgccgcaagatggagatcgat
gacggcacgtccacctggggagaccccagcgcctacaacaagaccgtgaatatgtgggac
cgcaacaaccccactggaggtaacggtaaccaagggaacaaccccacccagccgccgacc
agcaagagtagcggaggcttgaccgtcaacaacagccacaacaaccactcctccgtcccc
cctagcaacaacaatcaccaccacatgaaccaccaccacctgcaccacggacagcccccg
ccacacagccagcaccacggcaacaacaatggatcccccaacaccgccgccccgcaccag
ggcagtggaccccagggcagaacaccgatggccaacccaggctggggggagctgcccagt
gtccagcagcccaagccagagccggcgtggggggagcccgctggcccctctcctgcagtg
gacaacggcacctctgcctggggcaaaccccctggtgttcctggaggctggggcgatggg
gggcacgagcccaatggaccctacaggaggggaaacaacggaccctctggacctgcaccc
tgcaagccagccctcaaatctatgcaagacggttggggaggcgggagggaggaggagacg
ggcatgtcttctggccaatgggatgctgatgccggagacgtgtggaacagccccacctcc
caggagaacaactcctcctgtaactcgtggggccagccacccaagaagggcccgcccaag
ggcaagatgggcaaccagccagacgaagcctggatcatgaaccgtctcatcaagcagctc
actgacatgggtttcccgagggatcctgctgaggaggctctgaagagcaacaacatgaac
ctggaccaggccatgagtgctttgttggagaagaagactgaactggacaagcggggcatg
ggcatgtcagactacaacaacgggatgaacaagccgttgggttgccgtcctcaggccctc
tccaaagacccctcctcggaccgcagcccattcctagacaaggacggtggtctgtcagac
gacgcccccccctcaccgtttctgccttctcccgtcagcctgaagctccccctgattaac
aacctgcagcctgggctggccctgggctccccggggctcaacatgcacaacttgaacaac
agacagatgcagagtggaatgttgggcagtagtggagcagcactatcccgggccatgcag
cagccgcctcctcagccgtcagtgccgcctctcggctcctcccagcctagtctacgcgct
caagtgcctcagtttctcacccctcaggttcaagcacagctcttgcagtttgctgcaaaa
aacattggtctgaaccctgcacttttaacctcaccaataaaccctcaacaaatgaccctg
ttgtaccaacttcagcaactgcaaatggcgtaccagcgtttacaaatccagcagcagatg
atgcaagctcagcgcaacgtctccggtcccatcagacaacaagagcagcaagttgcacgt
acaatcaataacatgcagcagcagatccaacagcaccagcgtcagctgtaccaggccctg
ctgatgaagcagcagccccccggctcccactcctcctcaggcctgcaccccggccaaggc
aaatcagccctggactcattcccaggccacccccaggctccgggcctctccgacctgcac
accaaagagccgcattcttctcccagctcctacagcccctaccccctctctggactcaat
ccaaacatgaatgtaaactgcatggaggtggggggcctgtccatgaaggagcctccccag
cctcagtcccgtctgtcccagtggacccaccccaactccatggacagcctctctggaaac
tcctcccacatggaggccaacctcaataagcacggtgccatttctgctgcttctaatctg
ggcccccctggaaagcccccccacatggatgactcctacagcccctacagtatgatgggt
gggtctgagtcccccacctcccccctggttccccctgacagctggggccagggaccggga
aagagccccaaggaccagatcaccaacggaacgaatatcaactggcccccagagttctgt
ccaggcgtgccctggaagggcctgcagaacattgaccctgagaacgaccccaacatgacc
ccaggaagtgttcccagcggccccaccatcaacaccaacatccaggacgtcaaccgctac
ctactccgtgaccgcagcggaggctcctcccctccttcaccgcctcagaacggtgctctg
cccccctccgcggactggccagtcagtggctgctacactagctctttcagtctgtcctcc
ccggatgaggagagtgcaggtaaactatctgacatgaagtccacctggtccccggggccc
atctcccacccctcccaggcttctctgtcccacgagctgtggaaggttccccaggggccc
cgcaacaacacagccccctccaggccacctccgggcctcaccaaccccgccaagccctcc
tccacctggggaggaaactccctgggcctggcccaaggctggagcagctcatacacctca
gagggcacaacctggagcacagacagctccaacaggaccagtagctggctggtactgagg
aacctcaccccccagatagacggctccaccctgcggacgctgtgcatgcagcacggcccc
ctcatcacattccacctcttcctgacccagggaaacgctgtggtgcgatacagctccaag
gaggaggctgccaaggcccagaagtccctgcacatgtgtgtgctggggaacaccaccatc
ctggcagagtttgccggggaggaggaggtgaaccgctactttgcacaaggccagcagcag
cagcttccgcccaccaccagctggcagcctaaccccggcaccaatcagacgcgcatgggc
ggaggctcgcagcagcacgccattggccatcactggagtggcggccttgggggaggagcc
aagaccggtggagacctgctgtgggggggcgtgccccagtactccagcctgtgggggccc
cctagtggcgatgatagtcgcggcgttatcgggagccccaaccccattaacacgctgttg
ccaggcgacctgctgagtggagagtccatgtag
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integrated database retrieval system
