Oncorhynchus nerka (sockeye salmon): 115142486
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Entry
115142486 CDS
T07952
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115142486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115142486
03036 Chromosome and associated proteins [BR:
one03036
]
115142486
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115142486
Coactivators
SAGA/TFTC/STAGA complex
115142486
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115142486
STAGA complex
115142486
TFTC complex
115142486
SAGA complex
115142486
SLIK complex
115142486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
RMC1_N
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_ELP1_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
115142486
NCBI-ProteinID:
XP_029537851
LinkDB
All DBs
Position
LG15:complement(5655007..5658922)
Genome browser
AA seq
618 aa
AA seq
DB search
MVLYYLIFSEVMKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQT
ESGCANIVSAAPCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCVLYPLFVYLHLDMVRC
SLKGAVDGFYSRFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEP
AYSYLLRYLQSEDNNTLCRALSTHIQVEVTSSPRTDYQLYGTTGAGATGATTTAPNSTSS
WSGADGPERGEAAGVEVPTGIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLL
NTAEVSADSKLLAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGS
GSEIKTLRGHSGPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVD
VSPCSLYFASGSHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVR
LWSTQQGASVRLFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTD
SVTSLSFSPDSSLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGLYTGNTSNVLNVQF
MACNLLLVTGTAQEKHGQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtgttatactatttaatattttccgaggttatgaagcgggtacgcacggagcagatc
cagtacactgtagctcagtacctgaagcggaggcagtatgtggacactgaaagttccctg
aaggggactaaactgtcccagtccgcagaggagatggctgccaacctcacagtgcagaca
gagtcggggtgtgcaaacattgtctctgctgcgccttgccaagctgaccctcaacagtac
gagacccaattttccagacttcgcaattttctttcagaagcggtgttgccatggggccag
gaggtgagctgcgtcctgtacccactcttcgtttacctccacctggacatggtacgctgc
agcctgaagggggcggtggatggcttctacagccgcttccacagcctcttcctgggggac
gccgagcagcgctccaccgtggagcagcttcgccatgtcctcacccagcaggatgtcacc
gccaaccccaagctcctggccttactcgaccacaagtacgtggtgaacctgacggagccg
gcctacagttacttgttacgctacctgcagagcgaagacaacaataccctctgcagggcc
ctcagcacccacatccaggtagaggtcacctcctcaccacgcaccgactaccagctgtac
gggacgacaggtgcgggagctaccggggccaccaccacggcccccaactctacctcctcg
tggtcgggtgcggatggccctgagcgaggagaggcggcaggggtggaggtccccacaggg
atcccgcagagcgaggtggccctggaggcactgcaggactgcattaagaaggtgcgtgag
gggccgccgtcactcaccaccgtgtgcttctatgccttccagcacacagagcagctactg
aacacggcagaggtgtctgctgacagcaagctgctggccgccgggttcgacagctcggcc
gtcaagctatggagtcttagggccaggaaactgaaggccaggccacaccggactgacgtg
tcacacatccgcctagcatgtgacgtgctggaagaggaggcagatgaagaggacggctca
ggcagcgagatcaagaccctgcgtggccacagcggtccggtgttccgcacagccttcctg
acagacagctcgggcctgctgtcctgctcggaggacacgtccattcgctactgggacctg
ggcagcttcaccaacacggctctctaccagggtcacgcctaccctgtctgggacgtggac
gtcagcccctgcagcctctactttgccagcggctcccacgaccgcaccgcccgcctctgg
actttctccaggacctaccctctgaggctctacgccggccacctagcggacgtggactgc
gtcaagttccaccccaactcaaactacctggccacaggctcaacggataaaaccgtccgc
ctctggagtacccagcagggggcgtcagtgcgcctgttcacaggccaccgcggccctgtg
ttgtccgtagccttcgcgcccaatgggaagtacctggcatcggcgggcgaggaccaacgg
gtgaagctgtgggacctggcctcaggggctctggtcaaggacctgaggggccacacggac
agtgtcaccagcctttcgttcagccccgacagcagcctggtggcctcctcttccatggac
aactcagtcagggtgtgggacatccgaaactcccacagcacaacacacgcggatggctcg
tccagcgagctggtggggctctacacaggcaacaccagcaatgtgctcaacgtccagttc
atggcctgtaacttgctcctggtgacgggaacagcgcaggagaaacatggacagtag
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integrated database retrieval system
