Oncorhynchus nerka (sockeye salmon): 115142487
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Entry
115142487 CDS
T07952
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115142487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115142487
03036 Chromosome and associated proteins [BR:
one03036
]
115142487
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115142487
Coactivators
SAGA/TFTC/STAGA complex
115142487
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115142487
STAGA complex
115142487
TFTC complex
115142487
SAGA complex
115142487
SLIK complex
115142487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Lysis_col
Motif
Other DBs
NCBI-GeneID:
115142487
NCBI-ProteinID:
XP_029537854
LinkDB
All DBs
Position
LG15:complement(5991839..5995455)
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFIYLHLDMVRCSLKLAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGMTVAGAAGAATMAPNSTSSWSGADGPERGE
AAGVEVPTAIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEHLLNAAEVSADSKL
LAAGFDSSVVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgcttttcatt
tatctccacctggacatggtgcgctgcagcttgaagctggcagtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgttctcacccagcaggatgtcaacgccaaccctaagctgctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccaactgtacgggatgacggtagcaggagccgccggggctgcc
accatggcccccaactctacctcctcgtggtcgggagcggatggccctgagcgaggggag
gcggcgggggtggaagtccccacagcgatcccgcagagcgaggtggccctggaggcgctg
caggactgcattaagaaagtgcgtgaggggccaccatccctcaccaccgtgtgcttctac
gccttccagcacacggagcacctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggtcgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagattaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagtctctacttttccagcggc
tcccatgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgagtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcttcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatagctcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagaaaaacatggacagtag
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