Oncorhynchus nerka (sockeye salmon): 115142487
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Entry
115142487 CDS
T07952
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115142487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115142487
03036 Chromosome and associated proteins [BR:
one03036
]
115142487
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115142487
Coactivators
SAGA/TFTC/STAGA complex
115142487
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
115142487
STAGA complex
115142487
TFTC complex
115142487
SAGA complex
115142487
SLIK complex
115142487
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_IFT122_1st
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
NBCH_WD40
WDR90_beta-prop_4th
DSE1_N
ANAPC4_WD40
PAC11
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_WDR41
Beta-prop_NOL10_N
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
ASA1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Tricorn_2nd
PEP5_VPS11_N
Beta-prop_WDR75_2nd
WD40_like
PROPPIN
PD40
WD_LRWD1
BCAS3_WD40
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
115142487
NCBI-ProteinID:
XP_029537854
LinkDB
All DBs
Position
LG15:complement(5991839..5995455)
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQAESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFIYLHLDMVRCSLKLAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHVQVEVTSSPRTDYQLYGMTVAGAAGAATMAPNSTSSWSGADGPERGE
AAGVEVPTAIPQSEVALEALQDCIKKVREGPPSLTTVCFYAFQHTEHLLNAAEVSADSKL
LAAGFDSSVVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFSSG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcaggcagagtcggggtgtgcaaacattgtctctgctgcc
ccttgtcaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgcttttcatt
tatctccacctggacatggtgcgctgcagcttgaagctggcagtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
cacgttctcacccagcaggatgtcaacgccaaccctaagctgctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagt
gaagacaacagtaccctctgtagggccctcagcacccacgtccaggtagaggtcacctcc
tcaccacgcaccgactaccaactgtacgggatgacggtagcaggagccgccggggctgcc
accatggcccccaactctacctcctcgtggtcgggagcggatggccctgagcgaggggag
gcggcgggggtggaagtccccacagcgatcccgcagagcgaggtggccctggaggcgctg
caggactgcattaagaaagtgcgtgaggggccaccatccctcaccaccgtgtgcttctac
gccttccagcacacggagcacctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggtcgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgacgtgtcacacatccgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagattaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctaccccgtctgggacgtggacgtcagcccctgcagtctctacttttccagcggc
tcccatgaccgcactgcccgcctctggaccttctccaggacataccccctgaggctctac
gccggccacctagcagacgtggactgtgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccctgtgttgtctgtagctttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgagtgaagctgtgggacctggcctcaggcgctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcttcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccacgcggatagctcgtccagcgagctggtggggctctacacgggaaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaagaaaaacatggacagtag
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