Oncorhynchus nerka (sockeye salmon): 115142512
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Entry
115142512 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup133-like
KO
K14300
nuclear pore complex protein Nup133
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115142512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115142512
03036 Chromosome and associated proteins [BR:
one03036
]
115142512
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
115142512
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
115142512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
115142512
NCBI-ProteinID:
XP_029537894
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Position
LG15:5659104..5675388
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AA seq
1140 aa
AA seq
DB search
MFSPRPTSCSGRRQSSRVTGRKSLAGTPTGLLFSPRRTSLAARSTPTRVQSYSTSEALHF
DVQTFGSSLPVKVMEALTMADADDQISVKVDESGWAWMVCGERLIIWKICQTAVAKLSVC
KGLQLPTSEFVYYADLISISSPSPLETATVQSISVMAVAPEGTARFWPSLAHEGNYAETV
VDMGENLCNFVVAVRGGSFIVSSYKGQLMRLGADPSGKXHYRGRLQQAQGMLSSIGRRVS
SLFGMLAPLTNNNLHSVLWVGETGCLYTLTSCGLSKWEVDEVTEHQVLSWDSSRALTESV
ADAIWGSESNYEEIKEGVNVTYMDMQLSQDGLVVFAAAWHLSDSPCLAYFCLVTLVDNGN
NISEELSVEVTKYNPPFQSEDALQAMRLLLPLASSPAAFLYSEELVFACSTGTGRGLPEE
KIPFNTPGDRLRGGGCCANLPVFFSQNSGLVAVVARESASMLPETMEDSLCFSLAGAGPE
ATAMETPTRMEPVAQEDKTKLLKAAFLQFCRNDLVGAQNMTDELFPPEGDGDREVGGELD
LVVTRINLDLVDDYPASDPRWAESVPDESAGFPLTSLIILHQLEDKMKAHGCFMDFLLQV
GLLDRLGQTTVRSSPMATRLLLCEHAEKLQAAMTLKNHHAKHGELVNRAILIALRKSNAT
VSTSLTAADVFFREVSQISSVFECLLEEEERTLKENPVDSVKWAEVVISVNTIIKDMLQA
AGQYRDTKASLYRASESTTAEPEYIPWTASSGLGGVRTIIARQHEVILRDVYPHADSEMR
NGLNEQLTALLDVLLGGYVAQLTSLRPGRPGQQDHYNTLEMEYTQRRSELLAPLLELGQY
QWVAALAEKYCDFDILVQMCEQTDNQNRLQHYMAKFADQNFADFLFRWYMEKGKRGKLLS
QPIAQHQQLASFLQSHEHLSWLHHIHVHDFSSAHETLYGQANMETRYFVKKKTLLALSKL
TALASDMPEAAMKKHVDDMVEQERFLLHQETLPKQLLEEKQQNPDTMPLLSAHNLINLYI
CDDNRRANEYDFKKALDLLEYIDEEDAVDIEGLKCEIFCKALKKDEWSSADGNDDPLEAA
KDSIFVKILLKLIQEGVPLQTYLPDFKDLLQLDEMEALKSKPTFEFVMRANYEHYLQAQI
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtttagccctcgtcccacctcttgttcaggccgaaggcagtcctcaagggtcaccggt
agaaagagtctcgccggtacacctacagggcttctcttttccccacgtaggacgtcgtta
gcagcgagatcaactcccacgcgtgtgcagagctactcaacttcagaagcactccacttc
gatgtccagacgtttggctcttctctacctgtcaaagtcatggaggctttgactatggct
gatgctgatgaccagatctctgtgaaggtggatgagagtggctgggcctggatggtgtgt
ggagagagactgatcatctggaagatctgccagactgctgttgcaaagttgtcagtatgt
aagggcctccagctgcccactagtgagtttgtctactatgctgacctcatctcgatttca
tctcccagccctctggagactgccactgttcagtctatctctgtcatggcggtggctccg
gagggaacagcccggttctggcccagtttggcccacgaggggaattacgctgagactgtg
gtcgacatgggcgaaaacctctgcaactttgttgtggctgttagggggggtagtttcatc
gtgtcatcctacaagggccagttgatgcgtctcggggcggacccctccggaaagnnccac
tacagagggcgcttacagcaggcccaggggatgctttccagcatcggacgccgcgtctcc
agcctctttggcatgctcgccccgcttaccaacaacaatctccacagtgttctctgggtg
ggagagacgggctgcctgtatactctgacctcctgtgggctcagtaaatgggaggtggat
gaggtcacagagcaccaggtcctcagctgggactccagccgtgctctgacggagagtgtc
gccgacgccatctgggggtcagagagcaactatgaggaaatcaaggagggagtgaatgtt
acctacatggacatgcagctgagccaggatggcctggtagttttcgcagcagcctggcac
ctctcagactccccctgcctggcctacttctgcctggtcaccctggtggacaacggcaac
aacatctctgaggagctctctgtggaggtcaccaagtacaacccccctttccagagtgag
gatgccctccaggccatgaggctgttgttaccactggcctccagccctgctgccttcctg
tacagcgaggagctggtgtttgcctgctccaccggtaccggcagaggtctacctgaggag
aagatccccttcaacacacctggtgaccgtctgcgtggtgggggctgctgtgccaacctg
ccggtgttcttctcccagaacagtggtctggtggccgtggtggccagggagagtgcctcc
atgctgcctgagaccatggaggactccctctgcttctccttggctggggccggccctgag
gcaactgctatggagactccgactaggatggagcctgtagcgcaagaggacaaaaccaaa
ctcctaaaagcagcattcctgcagttctgccggaatgacctggtgggggcccagaacatg
acagatgagctgttccccccggagggggacggagacagggaggtgggcggggagctggac
ctggtggtgacccggatcaacctggacctggtggacgactacccagcctcagacccccgc
tgggccgagtctgtccctgacgagagtgctggcttccccctgacctccctcatcatcctc
caccagctagaggacaagatgaaggcccacggctgcttcatggacttcctgctacaggtg
ggtctcctggaccggttgggccagaccacggtgcgttcgtctcccatggcgacgcgcctg
ttgctgtgtgaacacgccgagaagctacaggcggccatgacgctgaagaaccaccacgcc
aagcacggcgagctggtcaatcgcgccatcctcattgccttgaggaagagcaatgcaacc
gtgtccaccagcctcacggccgcagacgtcttcttcagagaggtgtctcagatctcctca
gtctttgagtgtctactggaagaggaggagaggactctgaaggagaaccctgtggactct
gtgaagtgggctgaagtggtgatcagtgtcaataccatcatcaaggacatgctgcaggct
gctggtcagtacagagacaccaaggcctcactgtacagagcctcggagagcaccactgct
gagccagaatacatcccatggaccgcctctagcggtctgggcggggtgcgcaccatcatc
gcccgccagcacgaggtgatcctgcgtgacgtgtaccctcacgccgactcggagatgcgc
aatggcctgaacgagcagctgacagcactgctggatgtgctcctgggaggctacgttgcc
cagctgacctcactgagaccgggccgtccgggccagcaggaccactacaacaccctggag
atggagtacacgcagcgccgctctgaactgctcgcaccactgttggagctgggtcagtac
cagtgggtggcggcactggcagagaaatattgtgactttgacattctggtccagatgtgt
gagcagactgacaaccagaatagactgcagcactacatggccaagttcgccgaccagaac
tttgcggacttcctgttccgctggtacatggagaagggaaagcggggcaagctgctctcc
cagcccatcgcccagcaccagcagctggccagcttcctgcagtcccacgaacacctcagc
tggctgcaccacatccacgtccatgacttcagcagtgcccacgaaaccctgtatggccag
gccaacatggagacacgttactttgtgaagaagaagactctgttggctctcagtaaactg
actgccctggcatcagacatgcctgaggctgcgatgaagaaacatgtagacgacatggta
gagcaggagcggttcctgctgcaccaggagactctgcccaaacagctgctggaggagaaa
caacagaaccctgacaccatgcccctgctcagcgctcacaaccttattaatctgtatatt
tgtgatgacaaccgacgagccaatgagtatgacttcaagaaggctctggatctactggag
tacatagacgaggaggatgctgtggacattgagggactcaagtgtgagatcttctgcaag
gccctcaagaaagacgaatggtcgtctgctgatgggaacgatgaccctctggaggcagcc
aaggacagcatctttgtcaagatcctcctcaagctcatacaagaaggtgttcctctacag
acctatcttcctgacttcaaagaccttcttcaactggacgagatggaggctttgaaatca
aagcccacttttgagtttgtaatgcgggccaactatgaacattacctgcaagcacagatc
tga
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