KEGG   Oncorhynchus nerka (sockeye salmon): 115142578
Entry
115142578         CDS       T07952                                 
Name
(RefSeq) THO complex subunit 4-like
  KO
K12881  THO complex subunit 4
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03013  Nucleocytoplasmic transport
one03015  mRNA surveillance pathway
one03040  Spliceosome
one05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115142578
  09122 Translation
   03013 Nucleocytoplasmic transport
    115142578
   03015 mRNA surveillance pathway
    115142578
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    115142578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115142578
   03041 Spliceosome [BR:one03041]
    115142578
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     115142578
    TREX complex
     115142578
Spliceosome [BR:one03041]
 Complex C
  Other components
   EJC/TREX
    115142578
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    115142578
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 115142578
NCBI-ProteinID: XP_029537998
LinkDB
Position
LG15:complement(7142871..7145805)
AA seq 273 aa
MADKMDMSLDDIIQQSKKGGGGRGNRGGRSRGSSGRGGSGGRPGGAASGGRTGGSGPMRS
RQNFSGDRSDSRPTPYSRPRELPDKWQHDMFEGGFGSNAGGGGGAGGGGVETGGKLLVSN
LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSQGTADVHFERRADALKAMKQYNNVPLD
GRAMSIQHVTSQIRDDNQRRPSQSSNGGSGGFNRDRIGRPNFSDRRGGGDRRAGRGSRGR
GRGGRGGGGKPQQLSAEELDAQLDAYNAKMETS
NT seq 822 nt   +upstreamnt  +downstreamnt
atggctgataagatggatatgtctttggacgacattattcaacaaagtaagaaaggcgga
ggtggccgcggaaatcgaggaggccgcagccgaggatcatcgggtcgaggtgggagtgga
ggccgacccggtggagctgcctctggaggccggaccggcggatccgggcccatgaggagt
cgacagaacttcagtggagacagaagcgacagcagacccacgccatacagcaggcccaga
gagctgccggacaaatggcaacacgacatgttcgaaggtggcttcggcagtaatgctggc
ggtggtgggggagcaggaggtggcggtgtggagactggtggcaagctccttgtctcaaac
cttgacttcggtgtgtctgacgctgatatccaggagttgtttgcggaattcggtacgttg
aagaaagcggctgtgcactatgaccggtctggccgcagccagggaaccgctgacgtccac
tttgagaggagggctgatgcactcaaagccatgaaacagtacaacaatgtaccactcgat
ggccgcgccatgagcattcagcatgtcacgtcacaaattcgagacgataaccagagacga
ccatcacagagttcaaacggaggcagtggtggattcaacagagacagaattggacgcccc
aatttctcagacaggcggggaggtggagacaggcgggccggcagaggctccagggggagg
ggtagaggcggacgtggtggtggaggcaaaccgcagcagttgtctgctgaagagctggat
gcccagttggatgcttacaatgctaagatggagaccagttag

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