Oncorhynchus nerka (sockeye salmon): 115142638
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Entry
115142638 CDS
T07952
Name
(RefSeq) spastin-like isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115142638
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115142638
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
115142638
Membrane trafficking [BR:
one04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
115142638
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
115142638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_22
TIP49
AAA_5
Vps4_C
Mg_chelatase
AAA_14
DUF815
AAA_16
IstB_IS21
RNA_helicase
nSTAND3
AAA_24
MIT
NPHP3_N
AAA_2
Motif
Other DBs
NCBI-GeneID:
115142638
NCBI-ProteinID:
XP_029538099
LinkDB
All DBs
Position
LG15:complement(9434393..9464670)
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AA seq
602 aa
AA seq
DB search
MSSPGGRGSRKKRGPAGSPPDGGSTCDQVSLHKRNLYYFSYPLLALFAVLRVLVLHFGEL
FAWLCERMSRAMAARPKQRAADEHANKVCEQDIGEQIRNHHKQAFEYISVALRIDEDDKV
HKEQAVQWYKRGIAELERGIAIEVAENGEKYERDKRLQAKMITNLIMAKDRLELLEKLRS
GPAQRDIYAESSNQSYHNGYLRSVSLLLAVSGAVPKKRDSLTTHSSHSLPRPKHTPKKTL
PAGHGGLQRSPSFIGPSSSHTQHRLVPQSNRNKSKTGNRQSCKPTTTPTSMSPLKKRDMK
NLKNVDSKLANLILSEIIDSGSSVRFEDVAGQELAKQALQEIVILPALRPELFTGLRAPA
RGLLLFGPPGNGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQP
SIIFIDEIDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEA
VLRRFAKRVYVALPTEDTRLKLVKNLLGKHGNPLTQKELSQLARMTEGYSGSDLTSLAKD
ASLGPIRELRPEQVRNMAANEVRNIRFSDFVESLKKIKKSVGPQTLDLYVRWNKDYGDTT
GA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagttctccgggaggaagaggcagcagaaagaagcgaggccctgcagggtccccgccc
gacggagggtccacctgcgaccaggtgtcactacataaacgaaatttgtattacttctca
tacccactgctggcgttgtttgcagtgctccgtgtcctcgtgttgcattttggcgaactc
ttcgcctggctgtgcgagcggatgtctcgtgctatggctgcgagacccaaacaacgggca
gcagatgagcatgcgaacaaggtgtgcgagcaggacatcggcgagcagatccgaaaccac
cacaaacaagcattcgagtacatctcagtggctctgagaattgacgaggatgacaaagtg
cacaaggaacaggcagtccagtggtacaaacgcggaatcgcagagctcgagaggggcatc
gcgatcgaggtagctgaaaacggcgagaaatatgaacgtgataaacgtctacaggccaag
atgatcactaatctgatcatggcaaaggatcgcctggagcttttagaaaagctgcgttca
gggccagctcagagagacatctatgcagagagctcaaaccagtcataccataacggttat
ctacgctcagtctccttgctcttggcagtaagtggagccgtacccaaaaagagggactcc
ctgactactcactccagtcactccctcccacgaccaaagcatacgccaaaaaaaaccttg
ccggcaggtcacgggggtctccagcgctcccccagcttcattgggccctccagcagtcac
acacagcacagactggtcccccagtccaacagaaacaagagtaaaacgggcaaccggcaa
agctgtaaacccaccaccactcccacatccatgtccccactgaagaagagggatatgaag
aacttgaagaatgtggacagcaaacttgccaacctcatcctcagcgagatcatagacagt
ggctcatctgtgaggtttgaggacgttgctggccaggagctggctaagcaggccctacag
gaaattgtcatcctgcctgcactaagaccagagttgtttacaggcttgagggctccagca
cgaggccttctgctcttcggtcctcctggcaacggaaagacgatgctggctaaagcagtg
gccatggagtccaacgccacattcttcaacataagtgcagccagcttgacctcgaaatat
gtgggggagggagagaagctggtgcgagctctgtttgccgtcgccagagaactgcaaccc
tcgatcatcttcatagatgagatcgacagtctactctgtgaaaggagagagggagagcat
gatgccagcagacgactgaagacagagttcttgattgaatttgatggggtgcaatctggt
ggggatgaacgggtgttggtgatgggagccaccaacaggcctcaggagctggacgaggct
gttcttaggcgatttgcaaaacgggtgtacgtggctttaccaacagaagacacccggcta
aaactggtcaagaaccttttagggaagcacgggaatcctctcacacagaaagaactgtcc
cagcttgccagaatgacagaaggctactctggcagtgacctgacctcgctggccaaagat
gcgtccctcggtcccatccgagagttgcgtccagaacaagtcaggaacatggccgcaaac
gaggtgaggaatatcaggttctctgatttcgtggagtcactgaagaagatcaaaaagagt
gtcggaccacagacgctggacctgtatgtgcgctggaacaaggactatggggacaccacg
ggtgcatga
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