Oncorhynchus nerka (sockeye salmon): 115142692
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Entry
115142692 CDS
T07952
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
115142692
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
one04812
]
115142692
Cytoskeleton proteins [BR:
one04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
115142692
Intermediate filaments
Intermediate filament-binding proteins
115142692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
115142692
NCBI-ProteinID:
XP_029538201
LinkDB
All DBs
Position
LG15:complement(11824335..11917556)
Genome browser
AA seq
2350 aa
AA seq
DB search
MTTVAAEYEHMEITQQYSSSDTVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKKT
FTKWVNSHLSRVSCRITDLYRDLSDGRMLIKLLEVLSGERLPKPTRGRMRIHCLENVDKA
LQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETDGDNKEKRSAKDA
LLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNLQNAF
NLAEQHLGLTKLLDPEDISVDHPDEKSVITYVVTYYHYFSKMKALKVEGKRIGKVLDNAI
ETEKMVEKYESLASDLLEWIEQTIIILNNRKFANSLNGVQQQLQAFNTYRTVEKPPKFTE
KGNLEVLLFTIQSKMRANNQKVYMPREGKLISDINKTWERLEKAEHERELALRTELIRQE
KLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVDAATKKHEAIETDITAYEERV
QAVVSVAKELEAEKYHDIKRITARKDNVIRLWEYLLELLKARRQRLEMNLGLQRVFQEML
YIMDWMDEMKMMLLSQDYGKHLLGVEDLLQKHALVEADIGIQADRVKAVNNNAQKFAIDG
DVYKPCDPQVIRDRVAHMEFCYQELTQLAAERRARLEESRRLWKFFWEMAEEEGWIREKE
QILSSDESGKDLTGAVRLLSKHRTLEDEMNGRAGHLQHTIAEGQAMADGGHFGAAKIRDR
IADLRAQWAALEELAGVRKAHLEEACALHQFQADADDADAWTLDALRIVSSSEVGHDEFS
TQALVRKHKDAAAEVASYRPVIDALHEQAAALPEEQAQSEEVKGRLAGIEERYKEVAELT
RLRKQALQDALALYKMFSEADACEVWIDEKDQWLNSMEIPEKLEDLEVIQHRFESLEPEM
NNQASRVAVVNQIARQLMHNGHPSEKDIKAQQDKLNNRWSQFRDLADQKKESLISALGVQ
NYHLDCNETKSWIREKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGDLRGE
AERLAGEHPDQAKAITGRLAEITAVWEEMKATLRNREESLGEASKLQQFLRELDDFQSWL
SRTQTAIASEETPNTLAEAEKLLAQHDGIKNEICNYEEDYQKMRDMGEMVTQGQTDAQYM
FLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEVFLNNQEYMLAHTEMP
TTLEGAEGAIKKQEDFMTTMDANEEKINGVVEAGRRLASDGNINADRIQERAASIDDRHK
KNREAAVELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQA
FMAELQSNKEWLDKIEKDGMQLVLEKPETESVVKEKLSALQKMWEELESTTQTKAQCLFD
ANKAELFTQSCADLDKWLGGLEGQIQSDDYGKDLTSVNILLKKQQILENQVEVRQREVVE
LQSQALVLSQEGKDTGEVDGQRQMVEHKFKELLDPLRKRKNFLVASREIHQFNRDVEDEI
LWVEERMPIATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRFDDIFERSESLLMEESLA
VEAMRQRLADLQQLWGLMIEETEKRHVRLEEAHNAQKYYFDAAEAEAWMSEQELYMMSEE
KAKDEQSSVAMLKKHQIVEQSVEDYAETVHQLSKTSRGLTAAGHPESERIGMRQSQVDKL
YAGMKDLSEERRGKLDERFRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQER
FREFARDTGNIGQERVDAVNRLADELINAGHADAATVAEWKDGLNEAWADLLELIDTRTQ
ILAASYELHKFYHDAKEILSRILDKHKKLPEEVGRDQNTVETLQRMHTTFEHDIQALGTQ
VRQLQEDAVRLQSAYAGDKADDIQRRESEVLEAWNTLLEACDGRRVHLLDTGDKFRFFSM
VRDLMLWMEDVIRLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTACIELGKSLLA
RKHYASEEIKDKLLQLMDKRKDMIDKWEDRREWLRLILEVHQFGRDAGVAEAWLLGQEPY
LFGRELGQSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTLELLEVRRQQEEEERMRK
PPSPEPLPEQDSPLQSGVENGLQNGLPSDQDSPQNGVDRVEIMNGVAEQNSKDPSPIPSP
TASRRGKGSLSSTLPTQNQDLPAAQLEGFLHRKHEWEGHNKKASSRSWHNVYCVINNQEM
GFYKDNKAAGQGIPYHNAIPISLMGAVCDVAMDYKKKKHVFKLRVTDGNEYLFQAKEEEE
MSTWIQAILNAGTPDKVSITPSNQSTPASSRAQTLPATVTLTSESSPGKREKDKEKDKEK
RFSLFGKKKL
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagtggccgcggaatatgagcacatggagatcacgcagcagtacagcagcagt
gacacggtcaacaaccgctgggatgatgagtgggacaacgagaacagctcagctcgcctg
ttcgagcgttcgcgcatcaaggccctggcagatgagcgcgaagcggtgcagaagaagacc
ttcaccaaatgggtgaactctcacctctcccgggtgtcctgccgcatcaccgacctgtac
agggacctgagtgatggacgcatgctcatcaaactgctggaggtgctgtctggggagaga
ctgcccaagcccaccaggggacggatgcgtatccactgcctggagaacgtggacaaggct
ctgcagttcctcaaggagcagagggtccacctggaaaacatgggctcacacgacatcgtt
gacggcaaccaccgcctcaccctggggctcatctggaccatcattctaaggttccagatc
caggacatcagtgttgagactgatggagacaacaaggagaagagatcagccaaggatgcc
ctgctcctctggtgccagatgaagactgctggctatccaaacgtgaacattcacaatttc
agcaccagttggcgagacggcatggctttcaatgccctcatccataagcacaggccagac
ctgattgactttgacaagctgaaaaagtccaatgcccaccacaacctgcagaatgccttc
aatctggctgagcagcatcttgggcttaccaagctcctagacccagaggatatcagtgtg
gaccaccccgatgagaagtcggtcatcacatacgtggtgacgtactaccactacttctcc
aaaatgaaggcgctgaaagtggaggggaaacgtattgggaaggtactggacaatgccatt
gagacagagaagatggttgagaagtacgagtctctggcctcagacctgctggagtggatc
gagcagaccatcatcatcctcaacaatcgcaagtttgccaactctttaaacggggtgcag
cagcagcttcaagccttcaacacatatcgcacggtcgagaaaccccctaagtttactgag
aagggcaacctggaggtgcttctgtttaccatccagagcaagatgagggccaacaatcag
aaagtctacatgcccagggagggcaaactcatctctgacattaacaagacctgggagaga
ctggagaaggcggagcatgagcgggagctggctctgaggacagagctgattcgacaggag
aaactggagcagctggctcgccgctttgaccgcaaggctgccatgagggagacctggctg
agtgagaaccagcgcctcgtctcacaggacaactttggcttcgaccttccggcggtggac
gcggccaccaagaagcatgaggccatcgagacggatattacggcgtacgaggagcgtgtg
caggccgtggtgtctgttgctaaggagctggaggcagagaagtaccacgacatcaaacgc
atcacagcgcgcaaggacaacgtgatccggctgtgggagtacctgctggagcttctgaag
gcgaggcgccagcgcctggagatgaatctgggtctgcagagggtcttccaggagatgctt
tacatcatggactggatggacgagatgaagatgatgctgctgtcccaggactatgggaag
catctgctcggagtggaggatctcctgcagaaacatgccctggtagaggccgacatcggc
atccaggctgaccgtgtcaaagctgtcaacaacaatgcccagaaattcgcaatcgacggc
gacgtttacaagccctgtgaccctcaggtaatacgcgaccgcgtggcccacatggagttc
tgctaccaggagctgacccagctggctgccgagcgccgggcccgcctggaggagtcccgc
cgtctctggaagttcttctgggagatggccgaggaggagggatggatccgtgagaaggag
cagatcctgtcgtcggacgagagcggcaaggacctgacgggggctgtgcgcctgttaagc
aagcaccgcaccctggaggacgagatgaatggccgtgccggtcacctgcagcacaccatc
gccgagggccaggccatggccgacggtggccacttcggcgccgccaagatccgcgaccgc
atcgccgacctgcgggcgcagtgggcagcattggaggagctggcgggcgtgaggaaggcc
catctggaggaagcgtgtgccctgcaccagttccaggcggacgcagacgatgccgatgcc
tggaccctggatgccctgcgcatcgtgtccagcagcgaggtgggccatgacgagttctcc
acacaggccctggtgcgcaagcacaaggacgccgccgccgaggtggccagctatcggccg
gtgatcgatgcgctccatgagcaggcggccgccttgcctgaggagcaggctcagtcggaa
gaggtcaagggccgcctggcaggcatagaggagcgctacaaggaggtggccgagctgacc
cggctgagaaagcaggcactgcaggatgccctggccctctacaagatgttcagcgaggcg
gacgcctgcgaggtgtggattgatgagaaggatcagtggctcaacagcatggagatccca
gagaagctagaagacctagaggtcattcagcacaggttcgagagcctggagcctgagatg
aacaaccaggcgtcacgcgtcgctgtcgtgaaccagatcgccaggcagctgatgcacaac
ggacaccccagtgagaaggacataaaagcccagcaagataagctcaataacagatggagc
cagttccgggatctggcggaccagaagaaggagtctctaatctccgcgctgggtgtgcag
aactaccacctggactgcaacgaaaccaagtcgtggatccgcgagaagacaaaggtcatt
gagtccacccaggagctgggcaacgacctgacgggtgtcatggcgctgcagcgcaaactc
actggcatggagcgtgacctggctgccatcgaggacaagctgggcgacctgcgcggcgag
gctgagcggctggccggcgagcacccagaccaggccaaggccatcacgggccgcctggcc
gagatcaccgctgtgtgggaggagatgaaggccacactgcgtaaccgcgaagagtccctt
ggcgaggccagcaaactgcagcagttcctgcgcgaactggatgacttccagtcgtggctg
tcgcgcacacagacagccatcgcctcggaggagacgcccaacacactggctgaggcagag
aagctgctagcacagcacgatggcatcaaaaacgagatctgcaactacgaggaggactac
cagaagatgcgcgacatgggcgagatggtgacccagggtcagaccgatgcccagtacatg
ttcctgaggcagcggctacaggcactggacacgggctggaacgagctgcacaagatgtgg
gagaaccggcagaacctgctgtcacagtcccacgcctaccagctgtttctcagggacacc
aagcaggccgaggtcttcctcaacaaccaggagtacatgctggcccatacagagatgccc
actacgcttgagggggccgaaggagccatcaagaagcaggaggacttcatgaccaccatg
gacgccaacgaagagaagataaatggcgtggtggaggctggcaggcggctggcgagcgac
ggcaacatcaacgccgaccgcatccaggagagagcggcgtctattgacgacaggcataag
aagaaccgcgaggctgctgtggagctactgatgaggctgaaggataaccgggaccttcag
aagttcctacaggattgccaggagctgtctctgtggatcaatgagaagatgctcacggcc
caggacatgtcgtacgacgaggccaggaacctccacagcaaatggctcaagcatcaggcc
ttcatggccgagttgcagtccaacaaggagtggctggacaagattgagaaggatgggatg
cagctggtgttggagaagcctgagacagagtctgtggtcaaggagaagctctcagccctc
cagaagatgtgggaagagttggagtccaccacccagaccaaggcccagtgcctgtttgac
gccaacaaagccgagctgtttacacagagctgtgccgacctggacaagtggctgggtggc
ctggagggccagattcaatcggacgactacggcaaagacctgaccagcgtcaacatcctg
ctcaagaagcagcagatattggaaaaccaggtggaggtccgtcagagggaggtggtggag
ctgcagagccaggcgctggtcctcagccaggaagggaaggacacaggggaggtggatggc
cagagacaaatggtggagcacaagttcaaagagctgctggacccgctgaggaagagaaag
aacttcctggtggcctcccgcgagatccaccagttcaaccgcgatgtggaggacgagatt
ctttgggtcgaagagaggatgccaattgcaacctccacggatcatggtcacaacctgcag
accgttcaactgcttatcaagaaaaatcagaccttgcagaaggagatccagggacaccag
ccccgcttcgatgacattttcgagcggagcgagagcctgctgatggaggaaagccttgcc
gtggaggccatgcgccagcgcctggccgacttgcaacagctgtggggcctgatgattgag
gagacggagaagcgtcacgtccgactggaggaggcccacaatgcacagaagtactacttt
gatgccgctgaggctgaggcctggatgagcgagcaggagttgtacatgatgtctgaggag
aaggccaaggatgagcagagctccgtagccatgctgaagaagcaccagattgtggagcag
tcggtggaggactacgctgagacagtccatcagctctccaagaccagcagaggcctgaca
gctgcaggacatccagagagtgagaggataggcatgcgtcagtctcaggtggacaagctc
tatgccggcatgaaggacctgtctgaggagaggcggggcaaactggatgagcggttccgc
ctgttccagctcaaccgcgaggttgacgacttggagcagtggattgccgagcgggaggtg
gtggccggatctcacgagctgggacaggactatgagcatgtcaccatgctccaggagcgc
ttccgggagtttgcacgcgacacaggcaatatcggccaggagcgtgtggatgccgtcaac
cgcctggccgatgagctgataaatgcgggccacgcagatgccgccacggtggccgagtgg
aaggatggactcaacgaggcctgggctgacctgctggaacttatcgacacgcgcacgcag
atcctggccgcctcctacgagctgcacaagttctaccatgacgccaaggagatcctgagc
cgcatcctggacaaacacaagaaacttccagaggaggtgggacgtgaccagaacacagtg
gagacactgcagaggatgcacaccaccttcgagcatgacatccaggccctgggaacacag
gtgaggcagctgcaggaggatgccgtccgcctccagtcggcctacgccggcgacaaggca
gacgacatccagcggagggagagtgaggtgctggaggcctggaataccctgctggaggcc
tgcgatggccgcagggtccacctcctggacacgggcgacaaattccgcttcttcagcatg
gtgcgcgacctcatgctgtggatggaggacgtcatccgtctcatcgaagcccaggagaat
ccaagggacgtgtcctcggtggagttgttgatgaacaaccaccagggtatcaaggctgag
atcgacgcccgcaatgacagcttcaccgcctgcattgagttgggcaagtctctgctagcc
agaaagcactatgcatcagaggagatcaaagataagttactacagctgatggacaaaagg
aaagacatgattgacaagtgggaggaccgacgggagtggttaagactgattttggaagtt
caccagtttgggagggatgcaggggtggcagaggcgtggctgctgggacaggaaccatac
ctattcggccgggagttggggcagagcgtggacgaggtggagaaactgatcaagaggcac
gaggcattcgagaagtcggccgccacttgggaggagcgcttctcagcactggagaggttg
actacgttggagttattggaagtgagaagacagcaagaggaagaagaaagaatgcgaaaa
cccccttcgccagagcctttaccggagcaagactcaccactgcagagtggagtagaaaac
ggactgcagaatggactgccctcagaccaggattctccacagaatggtgtggacagagtt
gagatcatgaatggagtggcggagcagaactcaaaggacccgagccccattccctcaccc
acagccagccggcggggcaagggcagcctgtcctccacattgccgacccagaaccaggat
ttgcctgcagctcagctggagggcttcctgcatcgcaagcatgagtgggagggtcacaac
aagaaggcctcaagcagatcctggcataacgtgtactgcgttatcaacaatcaggaaatg
ggcttctacaaagacaacaaggctgctggtcaaggcatcccctaccacaatgcgattccg
atcagtctaatgggggctgtgtgtgatgtggccatggattacaaaaaaaagaaacatgtc
ttcaaactcagagttacggatggaaatgagtatctcttccaagccaaagaagaagaggag
atgagcacatggatccaggccattctgaatgcggggacacctgacaaggtatcgattacg
cccagcaaccagagtactccggcgtcaagccgagcccagaccctgcccgccaccgtcacc
ctcaccagcgaatccagcccgggcaagcgggagaaagacaaggagaaggacaaggagaag
cgattcagcctgttcggcaagaaaaaactataa
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integrated database retrieval system
