KEGG   Oncorhynchus nerka (sockeye salmon): 115142754
Entry
115142754         CDS       T07952                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL2-like isoform X1
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115142754
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115142754
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115142754
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115142754
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     115142754
    Little elongation complex (LEC)
     115142754
SSDB
Motif
Pfam: ELL Occludin_ELL
Other DBs
NCBI-GeneID: 115142754
NCBI-ProteinID: XP_029538295
LinkDB
Position
LG15:complement(13853566..13878939)
AA seq 717 aa
MLGRQRDDGGGLVKMAALSEDGRYGLNCGRRNADRVTVLHVKLTETAFRAIESHQTCKNV
PSSRPTIQFKGLQGRIKIPRTDSLDGSQNFDFYLSNVGKDNPQGSFECIQQYVSSSGTPH
LVSLGTVQDKVTVCATNDSYQVTRERMAQAEEDSRKRGTKVLKPVGQFRGKKVQIRKPAP
SGSEPVAERKRSTPINPANTIRKCLANNPVSQRPYRDRLVHLLALRSYKKLELLARLQRD
GVSQKDRSSLGSTLQQVANLNPKDNSYSLKDFVYRDVQRDWPGYSEDDRVQVNGILVRKL
GLPTETLSSSSPLKDGLPASPQQKCQPELPVHFTDPLMPKKPRISHVTSQGPPAAPTPIP
TSSSRERRAPPKEDDSHHSAAATTNTKRSSLPASTTTTAGPPLNHHHLPPPSQLQVSQRP
PPSHQSGPGSNSNSPSTPEGRGTQDLPLDQSSTCLEPPSPITTSSPPSRTTDRYGPCMPP
PASSSPQSHPALTISSSSSSSTIIPPPSPSSSKKSKKKSKKHKEKDREKERHKDVRSSKG
DGPGVSPRGVPVVDAQRPRKRHRDKAEERQTPVIPAKSPVCLDEDTKERPVHSSDLSSTT
VMPDYISKYTAVVSMDQRQTYKDEFNAEYEEYRVLHTRVENITRRFHHLDTESRRLPPGT
KEYQEVHEEVLQEYNKMRQHSPNYQVEKQRCEYLHNKLAHIKRLIADFDQRRAQSWR
NT seq 2154 nt   +upstreamnt  +downstreamnt
atgctcggacgtcagagggacgatggtggagggctggtaaagatggcggcgctctccgag
gatgggaggtatggactgaattgtggccgacggaatgccgatcgagtcaccgtattgcac
gtaaaattgacagagacagctttcagagcaatagagagccaccaaacctgtaagaatgta
ccgtcctcgcggccaacaatacaattcaagggactccaagggcgcattaagatcccaagg
actgactctctggatggctctcagaactttgacttctatctgtccaatgtgggcaaggac
aaccctcagggaagctttgagtgcatccaacaatatgtgtccagctcagggaccccccac
ctggtgtccttggggacggttcaggacaaagtcacggtgtgtgccaccaacgactcctac
caggtgacccgggagcgcatggcgcaggccgaggaggacagtcgcaaacgggggaccaag
gtccttaagcctgtgggccagttcagaggtaagaaagtccagatccgcaagccagcgccg
tcaggctccgaaccagttgcggagcgcaaacgctccacccccatcaacccagccaacacc
atccgcaagtgccttgccaacaacccggtgtcccagcggccctaccgcgaccgcctcgtc
cacctgctggctctgcgctcttacaagaagctggagctactggccaggttgcaacgggac
ggggtcagccagaaggaccgcagctctctggggagcaccctgcaacaagtggccaacctg
aaccccaaagataactcttactctctgaaggactttgtgtaccgcgatgtgcagagggac
tggccgggctactccgaggatgaccgcgttcaggtcaacgggatcttggttcggaaactg
ggccttcccactgagacactttcctccagcagtcctcttaaagacggcctcccggcttcc
ccacagcagaagtgccagcccgagttgccggttcacttcaccgaccccctgatgccgaag
aagccccgcatctcccatgtcaccagccaagggccccctgccgccccaacccccatcccc
acctcgtcctctagagagcgccgcgcccccccgaaggaggacgacagccaccacagcgct
gctgccaccaccaacacaaagcgctcgtctctcccagccagtaccaccaccactgctggc
ccgcccctcaaccaccaccaccttccccctccttcccagctccaggtttctcaacgccct
cccccgtcgcatcagtctggcccgggctccaactccaactcgcccagcacgcccgagggc
cgtggcacccaggacctgcccctggaccagagctccacctgcctggaacccccctcaccg
ataaccacctccagccccccgagcaggaccactgaccgttatggcccctgcatgccgcca
ccagccagctccagtccccaaagccacccagccctcaccatctcttcatcctcctcatcc
tctaccattatcccccctccctcgccaagcagtagcaagaagtccaagaaaaagtcaaag
aagcacaaagagaaggaccgcgagaaggagaggcacaaggatgtgcgaagcagtaaaggc
gatggccctggtgtcagcccccgaggggtgccggttgtggacgctcagaggcccaggaag
agacaccgcgacaaggcggaggagagacaaacgccagtcatccccgccaagagcccagtc
tgcctggacgaagacactaaagagaggccagtccactcgtcagacctatcctccaccact
gtgatgccagattacataagtaagtacacggcagtggtgtctatggaccagaggcagacc
tacaaggacgaattcaacgccgagtatgaggagtaccgcgtcctgcatacccgtgtggag
aacatcacccgccgcttccaccatctagacaccgagtccaggaggctgcctcccggcacc
aaagagtaccaggaagtacatgaagaagtgttgcaggagtacaataaaatgagacaacac
agccccaactaccaggtggagaagcagcgctgcgagtacctgcacaacaagctggcccac
atcaagcgcctcatcgctgactttgaccagcgcagggcccagtcctggcgctag

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