Oncorhynchus nerka (sockeye salmon): 115142771
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Entry
115142771 CDS
T07952
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6-like isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115142771
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115142771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
MUN
Motif
Other DBs
NCBI-GeneID:
115142771
NCBI-ProteinID:
XP_029538348
LinkDB
All DBs
Position
LG15:complement(15258360..15367404)
Genome browser
AA seq
3098 aa
AA seq
DB search
MAFCVLGNKCGGKTQCSAADGLTDAATVKRNMKIQNKDKQMSTIHLLKHTPATAASTATD
QNAQTPFPSGPLGSKDQIRVLGGGQINHCMSHAKHPRMGEAGTSSGSLSPCAPSSPLNSE
EDDGGGGRRAKKKKRKKKDKKGEPGAAWQHKGSEKDNKPKKKRQQKEGKELLPCKSKAPK
KLEVKVKEVKSPKEAPKEVKRGRKPKVQAPPLAKPPAECKSAPSPPRQRGRKPREQVLQG
PVPVEKKKKGKRKSVAVLQEAGESDDAASLSTLVVGGEESIDPLDNTKRRSGRQVKRRKY
NEDLDFKVVDDDGETIAVLGTGRIPALNAATLAWQAEEPPEDEANIIEKILSVRTAKKEA
SPEETPEESEEFYVKYRNFSYLHCKWATLEDLEKDPRIHQKIKRFRTKQAQMKHIFVEPD
EDLFNPDYIEVDRILEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDPGKIREF
EEIKRIPEYKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQISR
QMIHQYEMYHKDQQGNIVSGGYKFHGVITTFEMIMADCPELKKIHWRCVVIDEAHRLKNR
NCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFGDLKTEE
QVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFTFLAKGA
NQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFNLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC
KVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGQMTKIEVEDLLRKGAYGALMDEE
DEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWAK
IAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRLSER
NRHYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWQLAECDIEVLCRSLLVYCVRHYKGD
DKIKSFIWDLITPAKDGHKQDLQNHSGLSAPVPRGRKGKKLKNQLSVPEMKHADWLVNCN
PEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAAQFLEGIPASKLEVALPDID
YIEIPAGWWDAEADKSLLIGVHKHGYERYNAMRADPELCFLERVGMPDVTALSAEQSGGE
VMADLTDSNCKSDDVKDDPESKQEEGEEGVERVDNKDETSSSNDAMDKHDIVVQDIGHRV
QEGFGQEELGQEGMELKGRPLWPAGPNLTARLRRLITAYQRFMRREPLRHDFLLPGASPG
PMSWQLGEELRHCTATAAKPDPLFLEWQRRWVMMSEQRWTRREQADFYRTVSSFGVVYDP
EKKTFDWSQFRSFARLERKTDESLERYFSSFVSMCRTACRLPPRKDEGPLDHNLFVEPIT
EERAARTLYRIELLRKVREQVLRHLLLGPRLQLCRPSLYLPVWWECGKHDRDLLIGAARH
GLSRTDYYILNDPQLSFLEAHRNYVQKENHKGYHPGVQHTGMTPSPHHHPCCLYETGLGQ
CHSPQPPEYHHPASSSSSIHAHSHPHIHVHGHPPEIVGTDPGGSLGMVSGPRESFLDCPP
LDESLELASLQQEGLASDSLHCKSAKEAFNGFPFNSAQGGQSMLNSYGVQGELNGEQSTE
MDPIISGKLRSDVLVGEQGSSEETGLMAPSLELDQELQAPWESTDHAGAADIFNDADPIL
GAPALETEFLDPEEQPEDGGREDRAGGVLDDCLGIPPSQSDPGEPLPSSFMLFKDIGVSE
EEPAEEHTDLSASCPSPYVPPPPLSLSHMTLYPHHQGDAEEPEKLSNSDAVAHMPSSKER
EAEDDVAFEFDKEMSVDSLYLVGPEQGLEASGISCEDSHQEEPFEGACDGTGMGSPVESF
EAALEGPREDTLERDMALGPGEEGLLEGQFEEPLEMSAMDPQEEEPVEGPLEDSCKDPAP
EEPFAGPLEERYDVEPEGASEGPAEAESTFSEHTLPTVDATDSLPPSPSVPTSQPEPQIK
LEFPLDPESSESKSDILEPDSTVLTPKLEQTKGLLEVKDEIEERPQKRGKTPASVVDSYV
EVARFAAPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEWPKDRVIINRLDSICHAILK
GKWPSSSQQYDSPSSLANTSVPNSVHQRAGFISTRVQPSQNLNFNIPAPSVTRLPKYKQR
GAGECSPGGWRLTSLPLLQERLVAPPYLPELKRGRRSFEYEGVVLSKQCHSGEKMPLTVP
HRGGALLLNGWQEAAMDLSKAGDLGIGGEVAATVDHMSHQVHPSSHKLPAMGAMQSVIQS
AMQGSVGVDMAGILQAGLIHPVTGQIVNGNLRRDDAFMRRRRGRRRNVEAVDMGFVKSRG
MHVPEQQGRVEVISHSAVSSTSSPPECPPGPSTPTQPEVVAIDREAANKGLMEWLRQNPN
YNMELPTFAPSPGAAMLHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGRRLG
GAMAPAIKELSRWLDANTEYYVAPDWADVVKHSGFLPEGKYTRILTEPVCRDQGPRRRGR
RPRSEMPKPLLSESPMGPLFMNGSLIGSMDLVSLQNLRNVQGIPLTGLMGFPHGFAVSAG
EDAKNGLSMLPMMLHGIHGSPHMFSVQGLMGQPPTSSAPTSSAAAVSTTTASSAASSPSR
GPSQASSSTQADGSGMQSDGERKREDKQSTEEKQLGAIGSHSIAAITTAAASSSSGVSSS
SGSHLAFNPFLVPGLSHGLLYPHMFLPHRGIMALPGMPPTESSGSPKRKKKRTREEGVVE
EASSHSHLQTDSGPPKTPSDGQTGESTVDQAGPEAREHQMEDNVQEEVTGHDSHASPEVN
PEKRIEEERETKENRVMEEEKLPRDEEEREPRGAQDSQ
NT seq
9297 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttgtgtccttggaaataaatgcgggggtaaaacccagtgttcggcagctgat
ggcctgactgatgcagcgacggtgaagagaaacatgaagatacaaaataaggacaaacag
atgtctaccatccacttactaaagcacactccagctacagcagcctctactgccactgac
caaaatgcacaaactccatttcccagcggacctttaggctccaaggaccagatcagggtc
ctaggaggcgggcagatcaatcactgcatgtcccacgccaagcaccccaggatgggcgag
gcgggcactagttcaggcagcctcagcccctgcgccccctcgtcacccctcaatagcgag
gaggacgatggaggaggcgggcggcgggcgaagaagaagaaacgaaagaaaaaagacaaa
aagggcgagcctggtgctgcctggcagcacaagggttcggagaaggacaacaaaccaaag
aaaaagaggcagcagaaagaagggaaggagctgctgccatgcaagtctaaggcgcccaag
aagttggaggtcaaggtgaaggaggtgaagtcgccgaaagaggcaccaaaagaggtgaag
agagggaggaaacccaaggtgcaggccccgcccctggccaagccccctgcagaatgcaag
agcgccccatctcctcccaggcagaggggccgcaaacccagagagcaagtcctacaaggg
ccggtaccagtggagaagaagaaaaagggcaagaggaaaagcgtggctgtcctccaggag
gctggagagagcgacgacgcggcctccctgtccacgctggtcgtggggggagaggagagc
atcgacccccttgataacactaagcgtcgctcagggcgacaggtgaagcgcagaaagtac
aacgaggacctggacttcaaggtggtagatgatgacggggagaccatcgccgtgctgggg
acaggccgtatccctgccctcaacgctgccactctcgcctggcaggctgaggagccacct
gaagatgaggcaaacatcattgagaaaatcctgtcggttcgaactgcgaagaaagaggca
tcccctgaggagacacctgaggagtcagaggagttctatgtcaagtacagaaatttctcc
tacctgcattgtaagtgggcaaccttagaggatttggagaaggaccctcgcatacaccaa
aaaatcaagcgcttcaggactaagcaggcccaaatgaagcacatatttgttgagcctgat
gaagacctctttaaccctgactacatagaggtggatcgaattctggaggtggccatcact
acagacacagagacaggagaggaggtgacacactacctagtgaaatggtgctccctgtcc
tatgaggaggctacatgggagcttcaagaggacgtggacccggggaagattcgggagttc
gaggagatcaagaggatccctgaatacaaatttgtggagagaccgcagccagacaagtgg
cagaagctggacaagtccaaagactaccgaaatgggaatcagctgagagagtaccagctg
gaaggcatgaactggctgctcttcaactggtacaacaggaagaactgcatcctggctgac
gagatgggcctggggaagaccatccagtccatcaccttcctcttcgagatgttttccatg
ggcctgcgtgggcccttcctcatcatcgcccccctctccaccatcaccaattgggagagg
gagttccgtacctggacggagatcaatgtcatcgtctaccacggcagccagatcagccgc
cagatgatccaccagtacgagatgtaccacaaggaccagcagggaaatatagtgtcgggc
gggtacaagttccacggggtgatcaccacctttgagatgatcatggccgactgtccagag
ctgaagaagatccactggcgctgcgtggtcatcgacgaagcccaccgcctcaagaaccgc
aactgtaaactcctggagggcctcaagctcatgaacctggaacacaaagtcctcctgacg
ggtacccctctgcagaactcggtggaggagctcttcagtcttctcaacttcctggagccc
ctacagttcccctcagagagcctcttcctagaggagtttggagatctgaagactgaggaa
caggtgaagaagctgcaggccatcctgaagcccatgatgctgcggcggctgaaggacgac
gtggagaagaacctggcacccaaggaggagaccatcattgaggtggagctcaccaacatg
cagaagaagtactaccgtgccatccttgagaagaacttcaccttcctggccaagggggcc
aaccagcataacatgcccaacctcatcaataccatgatggagctgcgcaagtgctgcaac
cacccctacctgatcaaaggtgcggaggagaagatcctggatagcttcaggaaaacacac
agccccgatgcctgggacttcaacctccaggcaatgatccaggcggcggggaagctggtg
ctcatcgacaaactgctgcctaagctgattgctggtggccacaaggtgctggtcttctcc
cagatggtgcgctgcctggatatcctggaggactacctcatccagaggaggtacacctat
gagcgcatcgatggcagagtgcgggggaacctgcgccaggctgcgattgacaggttctgt
aaggtggactcggaccgctttgtgttcctgctgtgtactcgtgctgggggcctaggcatc
aacctgaccgctgcagacacctgcatcatcttcgactcggactggaacccccagaatgac
ctacaggcccaagctcgctgccaccgcatcggccagagtaaagcagtgaaggtgtacaga
ctgatcactaggaactcctatgagagggagatgtttgacaaagccagtctgaagctgggt
ctagacaaggccgtgctgcaggacatcaatcgaaagggcagcctcaatgggcagatgacc
aagattgaggtggaggacctgctgaggaagggggcatatggagcgctgatggacgaggag
gacgagggctccaagttctgcgaggaggacatcgaccagatcctgcagcgccgcacacaa
accatcaccattgagacagagggcaagggctccaccttcgccaaggccagctttgtgtct
tctggaaacagaactgatatttccctggacgatcccaacttctggcagaaatgggccaaa
atagcagagctggagattgattccaaagcagagaaggagagcctggtgattgacacgcct
cgtgtgaggaagcagacacgccactacaactcgttcgaggatgacgagctgatggagttc
tcagagctggacagcgactcagaagagaggccctgtcgcacccgccgcctcagcgagagg
aacagacactacctccgcgccgagtgcttccgcgtcgagaagaacctgctcatattcggc
tggggtcgctggaaggacatcctgacccacgggcgcttcaagtggcaactggccgaatgt
gacattgaggtgctgtgccggtcgctgctggtctactgcgtgcgccactacaagggcgac
gacaagatcaagagctttatctgggacctcatcacacccgccaaggatggccataaacag
gacttgcagaaccactctggtctgtcggccccagtacccaggggacgcaagggtaagaaa
ttaaagaaccagctgagtgtgcctgagatgaagcatgcagactggctggtcaactgcaac
ccagaggtggtactgcatgatgacagctacaagaaacacctcaaacagcactgcaacaag
gtacttctgagggtgaggatgctgtactacctgaaggcggaggtcctgggagaggctgct
gcccagttcctggagggtattcctgccagtaaactggaggtggcactgcctgacatcgac
tacatcgagatcccagcaggctggtgggatgcagaggcagataagtctctcctcatagga
gtacacaaacacgggtacgagcggtacaacgccatgcgggccgacccagagctgtgtttc
ttggagagggtgggcatgcctgatgtcacagcgctctcagccgagcagagtggaggagag
gtgatggctgacctcactgacagtaattgcaaaagtgatgacgtgaaagacgatcctgaa
agcaagcaagaggagggagaggagggagtggaaagggttgataataaggatgaaaccagc
tccagcaatgatgcaatggacaagcatgacattgttgttcaagacataggacacagggtc
caggagggctttggccaggaagaattgggccaggagggcatggagctgaagggtcgccct
ctgtggcccgccggccctaatcttactgccaggctgcgtcgcctcatcacagcttaccag
cgcttcatgcgacgcgagcccctgcgtcatgacttcttgctgccaggggcaagcccggga
ccgatgtcctggcaactgggggaggagcttaggcactgcacggcaaccgctgccaaacct
gaccctctcttcctggagtggcagagaaggtgggtgatgatgtcagagcaaaggtggaca
cggcgtgagcaagcagatttctaccgcaccgtgtcgtcgttcggcgtggtgtacgaccca
gagaagaaaacctttgactggagtcagttccgctccttcgcccggctggagaggaaaacg
gacgagagcctggagagatacttcagcagctttgtgtccatgtgccgcaccgcctgcaga
ttgccccccaggaaggacgaagggcctctggaccacaatctgtttgtagagcccatcaca
gaggagcgagcagcacgcactctctaccgcatcgaactgctgcgcaaggtcagagagcag
gtgctgcgccacctgctgctgggcccacggctgcaactgtgtcggcccagcctttacctg
cccgtgtggtgggagtgtggcaaacacgaccgcgacctcctgattggggcagcccgtcac
ggtcttagccgcaccgactactacatcctcaacgacccacaactctccttcctggaggcc
caccgcaactacgtccagaaggaaaatcacaagggctaccatcctggggtgcaacacaca
ggcatgacaccctcgccccaccaccacccctgttgcctgtacgaaacgggcctcggccaa
tgccactctccccagccgccggagtaccaccacccagcctcctcctcctcgtcgatccat
gcccattctcacccgcacatccacgtccatggtcacccgccagagatagtgggcacggat
cccgggggcagcctaggtatggtgtctgggcccagggagagcttcctggactgcccccct
ctggatgagtccttagagttggcctcactgcagcaagagggcctggcctcagattccctc
cattgcaagtctgccaaggaggccttcaatgggttccccttcaactcagcgcagggtggc
cagagcatgctcaactcgtatggtgtgcagggggagctgaatggcgagcagtcgaccgaa
atggaccctatcatctcgggcaagctgcgcagcgacgtgttggtgggggagcagggctcc
tctgaggagacgggcctcatggcgccctcgctggagctggaccaggagctgcaggcaccc
tgggagagcacggaccacgccggcgccgcagacattttcaacgacgctgaccctatcctg
ggggcgcccgcccttgagactgagttcctggaccccgaagagcagccggaagatggggga
agggaggacagagcagggggagtgcttgatgactgcctgggtatccccccctcccagagc
gacccaggggaaccgctaccctccagttttatgctgttcaaggacatcggcgtgagcgag
gaggagcctgctgaggagcacaccgacctctccgcaagctgcccttcaccctacgtcccc
cctccgcccctgtcgctgtcccatatgaccttgtacccccaccaccagggtgatgccgag
gagccagagaagctgagcaactcggacgccgtcgcccacatgcccagctccaaggagaga
gaggcagaggatgatgtggcctttgagtttgacaaagagatgtctgtggacagtctgtat
ctggtggggccggagcagggcctggaagcatcaggtatatcatgcgaggactctcaccaa
gaggagcccttcgagggtgcctgtgatgggacgggaatgggatctccagtagagtcattt
gaggctgccctagaggggccaagggaagatactttagaaagggacatggccttagggcca
ggagaggaggggcttctagaagggcagtttgaagaacccctggagatgtcagccatggat
ccccaggaggaggaaccagtggaggggcctctggaagactcttgtaaagacccagcacca
gaagaaccattcgcagggccattggaagagcgttacgacgtggaaccagaaggggcctcc
gaggggcctgccgaagcagagagcactttcagcgaacacacactacccactgttgatgca
acagactctctgcccccgtccccctcagtccccacgtcccagcctgagccacagatcaaa
ctggagttccctctggacccagagagctctgagagcaagtcggacatcctggagcctgac
agcactgtcctcacgcccaaactggagcagacaaaggggctgctggaagtgaaggacgag
atcgaggagaggccccaaaaaagggggaaaactccagcctccgtggtggacagctatgta
gaggtggcacggtttgcagcccccatgtccatgtgtgagatgcctgacagtctgcaggac
gcgagggagcctaccatcgcccaactgctgcaggagaaagccctctactccttctctgag
tggccaaaggaccgggtgatcatcaaccgcctggacagtatatgtcacgccatcttgaag
gggaagtggccctcgtccagccagcagtatgactctcccagctctctggcaaacacctct
gtgcccaacagtgtgcaccagagggctggcttcatctcaaccagggtacagccatcccag
aaccttaacttcaacatcccagccccttctgtcacccgcctgcccaagtacaagcaaaga
ggtgccggagaatgcagcccaggaggctggaggttgacatccttgcctctcttgcaggag
aggctggtggcgccgccctatctgcccgaactaaagcggggtaggcggtcgtttgagtac
gagggcgtggtgctcagcaagcagtgccactcaggggagaagatgcccctaacggtgccg
caccgaggcggggcgctgctgctcaacggctggcaggaggcggccatggacctctccaag
gccggggatctgggcattgggggcgaagttgcagccactgtagaccacatgagccaccag
gtccaccctagttcccacaaactgcctgccatgggcgccatgcagagtgtcattcagagt
gccatgcagggctcggtgggagtagacatggccgggatcctgcaggcaggtctcatccac
cccgtcaccggccaaatcgtcaatggcaacctgaggcgcgacgatgccttcatgcgccga
aggcgaggcagacggagaaacgtggaggctgtcgatatggggtttgtcaagagcagagga
atgcacgtgccggaacaacagggtagggtagaagtcatcagccattctgcggtgtcgtcc
acctcctccccaccggagtgccccccgggaccctccacacccacccagccagaggtggtg
gccatcgacagagaggctgccaacaagggcctgatggaatggctacggcagaatcctaac
tacaacatggaactgcccacttttgcaccgtctcctggcgcagcgatgttgcacagcttt
gtggagcggcccaaacagcggagacatcgctgcaaagaccccaccaagctggacgtcaac
tccctaacaggggaggagagggtgcccgtggtccacagaagcactggccgcaggcttggg
ggtgctatggctccagcaatcaaggagctctcccgatggctggacgcaaatactgagtac
tacgtggcacccgactgggcagatgttgtgaaacactctggctttctacccgagggaaag
tacacgcgcatactcacagagcccgtgtgccgcgaccaagggccccgccgccggggccgt
cgtcctcgcagcgagatgcccaagcccctcctctcggagtcacccatgggcccactcttc
atgaacggcagcctgatcggcagcatggacttggtcagcctccagaacctccgcaatgtc
cagggcatcccactcacgggcctgatgggattcccccatggcttcgccgtgtccgctggt
gaagatgccaagaacggcctgagcatgcttcccatgatgctccacggcatacatggctcc
ccccacatgtttagtgttcaggggctgatggggcagccgcccacaagctccgctcccacc
tcctcagcggctgcagttagcaccactacggcttcctccgcggccagtagcccctcacga
ggccccagccaggcgtcttcgagcacacaggcagatggctccggcatgcagtctgacgga
gagagaaagagggaggacaagcagtcgacagaggaaaagcagctaggtgcgataggcagc
cacagcatcgcagccatcaccactgcggcggccagcagcagcagtggcgtcagcagtagc
agtggcagccacctggccttcaaccctttccttgttccagggttgtcccatggactgctg
taccctcacatgttcctcccacacaggggcatcatggcgctgccaggcatgccgcccaca
gagtcctccggcagccctaagaggaagaagaaaagaacaagggaggaaggggtggtggag
gaggcaagcagccacagccacttacagacagacagtgggcctccgaaaacacccagcgat
ggtcagactggggagagcacggttgaccaggccgggccggaggctagggagcatcagatg
gaggacaacgttcaggaggaggtcacgggacacgactcccatgcttctccagaggtcaac
ccagagaagaggattgaagaggagagagaaacaaaggagaatagagtgatggaggaggaa
aaactgcctagagatgaggaggagagagagccaaggggggcacaggattcacaatag
DBGET
integrated database retrieval system
