KEGG   Oncorhynchus nerka (sockeye salmon): 115142893
Entry
115142893         CDS       T07952                                 
Name
(RefSeq) WD repeat-containing protein 82-like isoform X1
  KO
K14962  COMPASS component SWD2
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    115142893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:one03019]
    115142893
   03036 Chromosome and associated proteins [BR:one03036]
    115142893
Messenger RNA biogenesis [BR:one03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     115142893
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     115142893
    COMPASS/SET1 complex (yeast)
     115142893
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 ANAPC4_WD40 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_HPS5
Other DBs
NCBI-GeneID: 115142893
NCBI-ProteinID: XP_029538577
LinkDB
Position
LG15:24322550..24334152
AA seq 343 aa
MKITDSVLRSFRVARTFRENSQKVNCVDYSSNGESAISSSDDDSIVLYDCQEGKPIRTLY
SKKYGVDLIRYTHGDANTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTDRVVALSMSPVD
DTFISGSLDMTIRLWDLRSPNCQGLTNPLGKPVCSYDPEGLIFAAGVDSEAIKLYDLRSF
DKGPFASFETLFSRVCEWTGLKFSRDGKQILISTNGGAIRILDAFNGAVLHTFSVREPLP
HCTDRPGSAYSSHTHLRVCTSQEGYNNSKGISLEACFTPDSDFVMIGSEDGRVHVWSTES
GMKIAVLDGKHSGPINTLQFNPKYMTFASACSNMAFWLPCVGD
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgaagattacggatagcgtgttgcgaagttttagggttgctaggacattccgggagaat
tcgcagaaagtcaactgtgtggactacagctcgaacggcgagagtgcaatatctagtagc
gacgacgactccattgttttatatgactgtcaggagggaaaaccaatacggaccctgtac
agtaagaagtacggagtagaccttatccggtatacacatggggatgccaacacagtggtc
tacagctccaacaaactagatgataccatccgatacctgtctctcactgacaacaagtac
atccgctacttccctgggcacactgatagggttgttgctctctccatgtcaccggtggat
gacacatttatctctggttccttggatatgaccatacgactctgggacctgcgctctcca
aactgtcagggtcttactaatcctttggggaagcctgtttgctcctatgaccccgagggc
ctgatattcgctgctggggtcgattctgaggcgattaaactgtacgacctccgctccttt
gacaagggcccattcgcctcctttgagactctgtttagccgtgtctgtgagtggactgga
ctgaagttcagcagggacgggaagcagattctcatttctaccaacgggggtgctattcgg
atcctagatgcctttaatggagccgtgctgcacactttctcagtgagagaaccgttacca
cactgcactgatagacccggaagtgcatattcttcacacacacatctacgagtatgcacg
tcacaggagggctacaacaacagtaaaggcatttcattggaggcctgcttcaccccagac
tcagactttgtcatgattggttcagaggatgggagggtccatgtgtggagtacagagagt
gggatgaaaatagctgttctggacgggaagcattcaggaccaatcaacacactgcagttt
aaccctaaatacatgacgtttgccagcgcctgctccaatatggcgttctggcttccctgt
gtaggagactga

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