Oncorhynchus nerka (sockeye salmon): 115142959
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Entry
115142959 CDS
T07952
Name
(RefSeq) protein polybromo-1-like isoform X1
KO
K11757
protein polybromo-1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115142959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115142959
03036 Chromosome and associated proteins [BR:
one03036
]
115142959
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115142959
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
115142959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115142959
NCBI-ProteinID:
XP_029538726
LinkDB
All DBs
Position
LG15:27756036..27794986
Genome browser
AA seq
1641 aa
AA seq
DB search
MSSKRRRATSPSSSSVSGGDFDDASSSTPGSGRKRRRPSNVPTVDPIAVCHEVYNTVRDH
KDDQGRLLCELFIRVPKRRKQPDYYEVVSQPIDMTKIQQKLKSEDYQDVEQLTADFQLMF
NNAKTYYKAEGVEYQEACRLWELYVHTRNEFVQPGDGDEDDDDGEDILDNRALFTEDETP
PSCLKEVLEQLLDAVVSYTDPSGRVISELFQKLPSKVHYPDYYAVIKEPLDLRAITQRIQ
IGYYKSVTGMAKDVDLLVKNAKTYNEPGSQVFKDANIIKKVFIQRKTEIDHAEPTKTSVR
IKNRRSAQGDRFSAITLALQYGSENDEDALLSGSVHYDEGESEAECLSSSMDMGNPVFQL
YEAVRGGRNSQGPLLSEPFLQLPSRKEYPDYYQQIKHPIALQQIREKMKNGEYESVEQMD
SDLTLMFENAKCYNVPTSGISKRALRLQQILLLKKRELLRRGDEEEQDSILSSDTGTGSA
TKRKSHKKNMKNRMKALYAAVTEAREPGTNRRLCDLFMVKPSKKDYADYYKVILEPMDLK
TIEHNVRSKRYATEEALMDDMRLMFRNARHYNEEGSQVYNDAGILEKMVKDKRKELGSSP
EEDTDNMGSPKLKLRKSGVSPKKSNKCLTPLQQRLNELYDAVRNYTDARGRRISTIFLRL
PSRAELPDYYATIKRPIDMERLRSHMAGGRYQDVDALVEDFAVMFNNACTYNEPESLIYR
DALLLHRVLLDTRRLQEGGEEGGGSPPAVGPVVMELIRNLFVSVLAHQDEEGRCYSDSLA
EIPAQDPTSPENPPLNFDVIRANIDRGRYRRLDVFQEHMFNVLEKARRLHRTDSEIFEDA
VELQQFFIKIRDELCKNGEILLSPALSYTSKHLHNDVEQEKREKLPKEIEEDKLKKEEEN
KEEGEKAEDPAGGGAGPERTYRQDCSFENRTYHVGDCVYVQPAEANLKPHIVCIERLWED
EAGEKWLYGCWFYRPSETFHLATRKFLKQEVFKSDYFNKVPVSKILAKCMVMFVKDYFKL
QPEGVRPEDVYVCESRYSARNKAFKKIKMWAGPAGVRFVPRDVPLPVIRVASMYAKRDQE
KLLAVADNGSHSIVDKELEDVPVEMSGGEPDCQYYDQLHYNNMWLKVGDCVYVQSHGLVK
PRVGRIEKLWVRDGAAFFFGPIFIHPEETGHEPTRMFYKREVFLSNVEEACPMTCVIGKC
VVSSFKDYLSCRPTEVSEEDVFLCESRYIESEKQMKKFKGLKRFSLHAKVVDDEVYYFRK
LIVPQKEASPLLNKKIEELELKLADMDEGDEDLDDLEDEDEAPETPSMPTIQTPLASDLD
VMPYTPPPQSTPKAKGVSKKEGAKRKVNMSGYILFSSEMRSVIKTRHPDFSFGELSRLVG
TEWRNLEAPKKVEYEERAARVVERQEKERAAQQQASPRAGTPVGSMMGVVPSPSHMGMMP
GPGMMGAYGPSYGMPMQGPHEGLLGMGPMPPHHMGPMPPQHLQPGMPGYHPGMPYPGMMG
PGMNGMQGSPGGHYYMQQPGMFSPGQQAPPPYPGQLGQPSHLQPMTPMFVAPPPKTQRVL
HSEAYLKYIEGLNAETDTVSKWDQSLKARRRDAHLSKDQESRLPSHWLKSKGAHKTMADA
LWRLRDLMLRDSLNIRQAYNM
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgaaaaggagaagggccacctctccatccagtagtagtgtgagcggaggggac
tttgacgatgcctcctcctccactcctggaagcgggcgaaagaggagaagaccctctaat
gtccctacggtagatcctattgctgtgtgccatgaggtgtacaacactgtcagggaccac
aaggacgaccagggaagactgctttgtgagctgtttatcagggtaccaaagagaaggaaa
cagccagactactatgaggtggtgtcccagcccatagacatgaccaagatccagcagaag
ctcaagtcagaggactaccaagatgtggagcagctcactgctgatttccagctcatgttc
aacaacgccaagacctactataaggctgagggtgtggagtaccaagaggcctgcaggctg
tgggaactctatgtccacaccaggaatgagtttgttcagccaggggatggtgatgaagat
gacgacgatggtgaagacatcctagataatcgtgctctcttcactgaagatgagacccca
ccgagctgcctgaaggaggttttggagcagctgctagatgctgtagtgtcatacacggac
ccctcaggaagggtcatcagtgagctcttccagaagctgccttccaaagtgcactaccca
gactactatgccgttatcaaggagccccttgatctgagagccatcactcagagaatacag
atcggatactacaaaagtgtcaccggcatggctaaggatgttgaccttctggtgaaaaat
gcaaaaacatacaatgaaccaggatctcaggtttttaaggatgctaacatcatcaagaag
gtcttcatccagagaaagactgagatagaccatgctgagcccactaagaccagtgtccgc
atcaagaaccggaggtcagcccagggagaccgtttctctgccatcaccctggctttgcag
tacggctcagagaatgatgaggacgccctgctctctggctctgtgcattatgacgagggt
gagtctgaggcggagtgcctgagctccagtatggacatgggtaacccagtgttccagctg
tacgaggctgtgagggggggcaggaacagccagggaccgctcctttctgaacccttcctc
cagctgccctccaggaaagaataccctgactactaccagcagatcaaacaccccatcgcc
ctgcagcagatcagggagaagatgaagaatggggagtatgagagtgtggagcagatggac
tctgaccttactctgatgtttgagaatgccaagtgttacaacgtgcccacctcaggcatc
tccaaacgggccctccggctgcagcagatcctgctgcttaagaagagggagcttttgagg
agaggtgacgaagaggaacaggacagcattctgtcctctgacacaggaaccggcagtgcc
accaagaggaaaagccataagaagaacatgaagaaccgtatgaaggcattgtatgctgca
gtgactgaagccagagagccagggaccaaccggaggctctgtgatctgttcatggtcaag
ccctccaagaaggattacgcagactactacaaggtgatcctggagcccatggaccttaag
accatcgagcacaacgtccgctcaaagcgctacgccaccgaagaagccctgatggacgac
atgaggctgatgttccgcaatgcacgtcactacaacgaggagggatctcaggtttataac
gacgctggcatcctggagaagatggtgaaggacaagaggaaggagctaggatcttctccc
gaggaggacactgacaacatgggatctcctaagctcaaactaaggaagagtggtgtgtct
cctaagaagtccaataagtgcctgacccccctgcagcagcgcctcaacgagctgtatgac
gctgtgaggaactacacagacgccagggggcgacgtatctccaccatcttcctgcgcctg
ccctcccgtgccgagctgcctgactactacgccaccatcaagaggcccatcgacatggag
cgcctgcgcagccacatggcgggaggccgataccaggacgtggatgctctggtggaagac
tttgcagtgatgttcaacaacgcctgtacctacaacgagccagagtccctgatctaccgt
gacgctctgctcctccaccgtgtgctcctggatacccggcggctgcaggagggaggggag
gagggcggcggctctccccctgctgtagggccagtggtcatggaactgatcaggaacctg
tttgtgtctgtgctggcgcaccaggacgaggaggggaggtgttacagcgactcactggct
gagatccctgcccaggacccaaccagcccggagaaccctccgctcaacttcgacgtgatc
cgggccaacatagaccgaggacgctaccgcaggctggacgtgttccaggagcacatgttc
aatgtgctggagaaggccaggcgcctgcacaggacggactctgagatctttgaggatgcg
gtggagctgcagcagttctttataaagatccgggatgagctgtgtaagaacggagagatc
ctcctctcccctgcgctcagctacacctccaagcacctgcacaatgacgtggagcaggaa
aagagagagaaactacctaaggagatagaggaggacaaactgaagaaggaggaggagaac
aaagaggagggagagaaggctgaggacccagctgggggaggtgcggggccagagaggaca
taccgtcaggactgcagctttgagaacagaacctaccacgtgggtgactgtgtctacgtg
cagccagccgaggccaacctcaagcctcacatcgtctgcatcgagcgcctgtgggaggat
gaagcaggtgagaagtggctgtatggctgttggttctacaggcctagtgagacctttcat
ctagccacacgcaagttcctcaagcaagaggtcttcaagagtgactacttcaacaaagta
ccagtcagcaagatactggcaaaatgcatggtcatgtttgtcaaggattacttcaagctt
cagcctgagggagtaagaccagaggacgtgtacgtctgtgagtcccgttactctgccagg
aacaaggccttcaagaaaatcaagatgtgggccgggccagccggcgtgaggtttgtccct
cgggatgtgccgttgcccgttatccgcgtggcctccatgtatgccaaacgtgatcaggag
aaactgttggccgtggccgataacggcagccacagcatcgtcgacaaggagcttgaggat
gtcccggtagagatgagtggaggggagccagactgtcagtactacgaccagctccactac
aacaacatgtggctgaaggtgggagactgtgtctacgtccagtcacacgggctcgttaaa
ccccgtgtcggcaggatagagaagctgtgggtgcgcgacggcgcagcatttttcttcgga
cccatcttcatccacccagaggagacgggacacgagcccaccaggatgttctacaagaga
gaggtgttcctcagcaacgtggaggaggcctgccccatgacctgcgtcataggtaaatgt
gtggtgtcgtcctttaaggactacctgtcgtgtcggcccactgaggtgtctgaagaggac
gtgtttctgtgtgagagccgttacattgagagtgagaagcagatgaagaagtttaagggc
ctgaagcgcttctccctccacgctaaggtggtggacgacgaggtctactacttcaggaag
ttgatagtgccccagaaggaggcgtctcctctgctgaataagaagattgaggagctggag
ctgaaactggcagacatggatgagggggatgaggatctggatgacctggaggatgaggat
gaggctccagagaccccctccatgcccaccattcagacccctctggcaagcgatttggac
gtcatgccttatacccctcctccccagtccactcccaaggcgaagggtgtttctaagaag
gaaggagccaagaggaaggtcaacatgagtggttatatcctattcagcagtgagatgcgt
tcggtcatcaagacccgccaccctgatttctccttcggggagctcagccgtctggtgggc
accgagtggaggaacctggaggctcccaagaaagtagagtatgaagagcgggcagccagg
gtggtggagcggcaggagaaggagagggcagcccagcagcaagcatccccgagagcaggt
accccagtagggtccatgatgggggtggtgccttcgcctagccacatgggaatgatgcct
ggtccaggcatgatgggagcttacggcccctcctacggcatgcccatgcagggcccccat
gagggcttgctgggtatgggcccaatgccacctcaccatatgggcccgatgcccccccaa
cacctccagccaggtatgcctgggtaccaccctggcatgccctaccctggtatgatgggt
cctggtatgaatggcatgcaaggaagtcccggaggccactactacatgcaacagcctggg
atgtttagcccggggcagcaggctcctccaccctacccaggccagctaggccagccctct
cacctccagcccatgactcccatgtttgtggctccaccgcccaagacacagagggtgctt
cactctgaggcctacctcaagtacatcgagggcttgaacgcagagaccgacacagtcagc
aagtgggaccaatctctcaaagcgcgtcggagagatgcccacctgtccaaagaccaggag
agcaggctcccttcccattggctgaagagcaagggagcccacaagacgatggcagatgca
ctgtggcgcctgcgggacctgatgcttcgagactcactgaacatacggcaggcgtacaac
atgtaa
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integrated database retrieval system
