Oncorhynchus nerka (sockeye salmon): 115142986
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Entry
115142986 CDS
T07952
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
115142986
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
one02000
]
115142986
Transporters [BR:
one02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
115142986
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
115142986
NCBI-ProteinID:
XP_029538780
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Position
LG15:28730031..28753555
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AA seq
599 aa
AA seq
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MAASLSAGKHETLPGPVQDTQQSVKERGQWDSKMEFILTVAGAIIGLGNIWRFPYLCYKN
GGGAFFIPYILYLVTCGIPLFILETALGQYTSQGGITCWRKICPVFEGMGYAAQVITIYG
CMTYIVILAWAFLYLFSSFTVDLPWANCNNAWNTDACVTFGTKNASSNWTGSLLNSSSSV
VEFWQRRVLRISDGIESLGSIRWELALCLLLSWIVCYFCIWKGVKSTGKAAYVTATFPYV
MLVVLFVRGVTLPGAEDGIFYYLYPNTTRLADPQVWMDAGTQIFYSYAIGLGYLTSLGSY
NKYNNNCYKDSFYLCLLNSGTSFVSGFAIFSILGHMAREQGVDISVVAESGPGLVFIVYP
QAVSLLPCPQFWAVCFFSMIILLGVDSQFVGLESLMTSVTDVYPNLIRKGYRREMLLLLI
CCCCYLVGLIMVTEGGLYIIQLFDHYVCSGATLLLLSICQSLSIGWIYGAERFCDNIEDM
IGYRPSSLVKYCWLYITPTICTGTFVFSLLKYSPLKFNNTYLYPWWAYWLGWFLAMSSLS
LIPITMVYKLYWGKGTFWQRLQTICRPADDLPMMMKEEMVGLYALDHVTDDEKTYSNNL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttctctctctgcaggcaagcatgagactctcccagggccggtgcaggacacc
caacaaagtgtgaaggagcgcggccagtgggatagcaaaatggagtttattctaactgtg
gctggcgctattattggacttggcaatatatggagatttccctatctttgttacaagaac
ggtgggggggcgttcttcatcccgtacatcctgtacctggtgacctgtggcatccctctg
ttcatcctggaaacggctctgggccagtacactagccagggtggcatcacctgctggaga
aagatctgcccggtgtttgaaggaatgggctatgccgcccaagtgattactatatatgga
tgtatgacctacattgtgattctggcgtgggctttcctctacctgttctcatccttcact
gttgacctgccatgggccaactgcaacaatgcctggaacacagatgcttgtgtgacattt
ggcaccaagaatgccagcagcaattggactggttctctcctgaattcgtcatcttccgtt
gtggagttttggcagcggcgagtgctgcggatatcagatgggattgagtccttgggaagt
attagatgggagctggctctgtgtcttctactgtcatggattgtctgttacttctgtatc
tggaaaggagtgaagtctactgggaaggcagcgtacgtcacggctaccttcccctatgtc
atgctagtggtgttatttgtcagaggagtgacccttccaggagctgaagatggcatcttc
tactacttgtatcccaatacaacacggctagctgatccacaggtttggatggatgcagga
acgcagatattctattcttacgccataggcctgggctacctgacttctcttggaagctac
aacaaatacaacaacaactgttacaaagactccttctacctgtgcttgttgaacagtggg
accagcttcgtgtctggttttgccatcttctccatactgggtcatatggctcgagaacag
ggtgtggacatctctgtggttgctgagtcaggtcctggcctggtgttcatagtgtacccc
caggcagtgtccctgctcccctgccctcagttctgggctgtctgtttcttctccatgatc
atcctattgggagtggacagccagtttgtcggccttgagagcctaatgacctcagtaacg
gacgtctacccaaacctcatcagaaaaggctaccggagggagatgctgctgctgctcatc
tgctgctgctgctacctggtcggactcatcatggtcacagagggtggcctctacatcatc
cagctgtttgaccattatgtgtgcagtggtgccactctgctgctcctctccatatgccag
tcactcagtattggatggatatatggtgctgaacgcttctgtgacaacattgaggatatg
attggctataggccctcctccctggtcaagtattgttggctctacattacccctactatc
tgcacaggaacctttgtattttccctgctgaagtacagtcctttgaagttcaacaacaca
tatttgtacccgtggtgggcctactggctaggctggttcctggctatgtcctccctatct
ctcatccccatcaccatggtctacaaattgtactggggcaaagggactttctggcagcgc
ctccagacaatctgtcggccagcagatgaccttcctatgatgatgaaggaggagatggta
ggtctctatgctctggaccatgttactgacgatgagaagacatacagcaataatctatag
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