Oncorhynchus nerka (sockeye salmon): 115143025
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Entry
115143025 CDS
T07952
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like isoform X1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04217
Necroptosis
one04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
115143025
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115143025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115143025
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
115143025
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
115143025
Multi subunit type E3
LUBAC complex
115143025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
ubiquitin
IBR
zf-RING_UBOX
zf-RING_11
DUF5817
Motif
Other DBs
NCBI-GeneID:
115143025
NCBI-ProteinID:
XP_029538851
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Position
LG15:30553048..30567428
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AA seq
528 aa
AA seq
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MSISLNFGSLWILMGLTMTSPEVTSNLVEAEELAQLLSEAISCGDKEEAKRCSEQLAELC
VPVSVMISRKAYSQDSIRLKVGVGDAQSENYIPVTLLVTLDMTISDLKEKINTDYGFHPS
LQSWVIGKRLARDSKTLFSHGVRKNGDQAYLYIKSAQAANLSREQVNQEEEHRRLDSIIE
SLSPLLARGATGPTPPPKTKQPAPPPLQPKPPVGWSCSVCTYANKPTRPGCEMCGSERPE
DYKVPEVYQPDEQEIQRLQLEEMANLQYQQALDEERERNFLSLVETDAHSLVPNTEELDC
PICLCSIPPGEGATLRECLHVFCRECLKGTIVNSMDPEVTCPYGDEDYSCDRKLQDREIQ
SLLSQEEHQKLLELRLSIAETRSENSYHCKTPDCAGWCIFEDEVNEFICELCKETNCLLC
KAIHKDMNCKEYQDDLRIRAENDVAAKQTTQMLESLLQNGEAMHCPKCKVIVQKKDGCDW
ICCLMCKTEICWVTKQARWGPNGSGDNSGGCGCRFDGARCHPNCQNCH
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttctctcaattttggtagtctctggatacttatgggtctaactatgacttct
cctgaggtcacaagcaacttagtagaagcggaggagctagcccagttgttgagtgaggcc
atcagctgtggtgacaaagaggaagccaaaaggtgttcagagcagctggcagagttgtgt
gtaccagtatctgtcatgatctcccgcaaggcttactcccaagactctattcggttgaag
gtgggagtcggggatgcacagtcagaaaactatattccggttactttgttggtaacactt
gacatgaccatttcagatctgaaagaaaagatcaatactgactatggatttcatccatct
ctgcaaagctgggtgatcggtaagcgtctggcacgggactctaaaactctgttcagccat
ggggtaaggaagaatggagaccaagcctacctgtacatcaagtctgcccaggctgccaac
ctcagccgggagcaagtgaaccaggaggaggagcaccgtcggctagacagtatcattgag
tcattgagtcctctactggccagaggagcaactggaccaaccccacctcccaaaactaaa
caaccagcacctcctcctctgcaaccaaagcctccggtgggttggtcatgctctgtgtgc
acctatgctaacaagccaacgaggccgggctgtgagatgtgtgggtctgaaagaccagaa
gattataaagtacctgaggtttaccagcctgatgagcaggagatccagagactccagcta
gaggagatggccaatctacagtaccagcaggcattggatgaagagcgggagaggaatttc
ttgagtctggtggaaacagacgcccacagcctcgtccccaacacagaggagctggactgt
cctatttgcctctgctccattccgccaggggagggagccacactgcgggagtgcctgcat
gttttctgcagggagtgtcttaaaggaaccatagtgaatagcatggatccagaggtgacc
tgcccttatggggatgaagactacagctgtgatagaaagctgcaggacagggagatccaa
tctcttctctctcaggaggagcaccagaagcttctagagctgaggctcagtattgctgag
acgcggagtgagaacagctaccactgcaaaacccccgactgcgctggctggtgcatcttt
gaggacgaagtcaatgagtttatttgtgagctctgcaaagagaccaactgcctcctctgc
aaggccatccacaaagacatgaactgcaaggagtatcaagatgatctccggatcagagct
gagaatgacgtggctgcaaaacagaccacacagatgctggagtccttactgcagaacggg
gaggccatgcactgtcctaagtgtaaggtcatagttcagaagaaggacggctgtgattgg
atctgctgcctgatgtgtaagacggagatctgctgggtcaccaagcaggctcgctgggga
ccaaacggttctggggacaactcaggaggctgtggatgtcgattcgatggggcgcgttgc
caccctaactgccagaactgccactga
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