Oncorhynchus nerka (sockeye salmon): 115143119
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Entry
115143119 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1-like
KO
K11757
protein polybromo-1
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115143119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115143119
03036 Chromosome and associated proteins [BR:
one03036
]
115143119
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115143119
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
115143119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
115143119
NCBI-ProteinID:
XP_029539081
LinkDB
All DBs
Position
LG15:34054219..34070161
Genome browser
AA seq
1654 aa
AA seq
DB search
MGSKRRRATSPSSSVSGGDFDDGQPSSSASSVGRKRRRTSNIPTVDPIAVCHELYNTIRD
YKDDQGRMLCELFIRAPKRRNQSDYYDVVTQPIDMMKIQQKLKMEEYDDVEQITADFQLL
FNNAKAYYKSDSPEYRAACKLWDLYLRTKNEFVQRGDYDDDDEDGDDAQNNPGGSNEDEN
APNCLKEVLEQLLDAVVTFSEPSGHLVSDLFQKLPSKVQYPDYYAIIKDPIDLKIIAQKI
QMSHYRSVGAMAKDIDLLAKNAKMYNEPGSQVFKDANTIKKVFAQRKTEIEHAEPIKSSI
RIRQVTPXTWXKVDFTSQTNNMQHLEAFFHELNSCVCVRNRRSAQGDRLSAITMALQYDS
DDDGILAGSVHYDEGESEAESMHHSMDMSNPIFQLYEAVRGGRNSQGQLISEPFLQLPSR
KDYPDYFQQISQPISLHQIRNKMKNNEYESVDQLDADLTLMFENAKRYNVPHSSIYKRVL
KLQHIQQLKRTELLRREDDSMDGDSMLSSTMSDTGSTKRKSHKKNTKKNRMKALYSAVTE
AREMGTGRRLCELFMVKPSKKDYPDYYKIILEPVDLRIIDHNIRSEKYMTEDALLEDMKL
MFRNARHYNEEGSQVYNDANVLEKVIKDKRRDLGPTPDDDDMSPKLKIRKSGITPKKSKY
LTPLQQKLNELYEAVKNFTDKRGRRLSTIFLRLPSRAELPNYYIAIKKPVDMEKVRSHML
ANKYQDVDALVEDLVLMFNNACTYNEPESLIYRDALVLHRVLLETRRDLEGGEDAHVPDV
ARLIQELIRSLFVSVLGHQDDEGRCYSDSLAEIPATDPSSPDRPPLNFEIIRANVDRGRY
KRLDVFQDHMFEVLEKARRMHRTDSEIFEDAVELQQFFIRIRDELCKNGEILLTPALSYT
SKHLHSDVEKEKKEKLPKEIEEDKLKREEEKKEAEKSEDPAGGAWQSGLQRTYSQDCSFK
DSMYHVGDYVYVEPAEPNLQPHIVCIERLWQDDAGEKWLYGCWFYRPNETFHLATRKFLE
KEVFKSDYFNKIPVSKILGKCVVMFVKDYFKLHPEGFRADDVYVCESRYSAKTKSFKKIK
MWTMPLSSVRFVPRGVPLPVVRVASMFAPKQEEEKPAEIQEEGKALDTMDKEREDVILDM
TNGEPGCQYYEQLCYNDTWLKVGDCIYIRSHGLVRHRVGRIEKMWMRDGAAYFFGPIFIH
PEETEHEPTRMFYKKEVFLSNLEESCPMTCIIGKCAVSSFKEYLSCRPTEVPEEDVLLCE
SRYIESDKQMKKFKGLKRFSLSGKVVEDEIYYFRKLIVPQKEPSPLLDRKIAVLEAKFAD
MTDEELEDLGEDDGELGDTSIPQLQSPMAGSDMDMPYTPPQVRAATYTGQMCGHVVKSTP
KSMKGMSKKEGSKRKINMSGYILFSSEMRAVIKAQHPDFSFGELSRLVGTEWRNLESPKK
AEYEERAAKVAEQQERERAAQQLAFPRAGMMGSYMPHMMLQDLVDGMFSMTGMPPHHMRL
PLLPHHHLMPGIPGFPGMPYPGVNAGAPGAYGTQMIGIGQQAPPPYPGQGQPALQQPSTP
IFVAPPPKPQRLLHSEAYLKYIEGLNAESSTISKWDQTLSARKKDVRLTKEQESRLPSHW
LKSKGAHSTMADALWRLRDLMLRDTMNIRQTYNL
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgggctcaaaaaggagaagggctacgtccccctctagtagtgtcagtgggggggacttt
gacgatggacagccttcatcctcagcatcttcggtaggtcggaaaaggagaagaacctca
aatattcccactgttgatccaattgcagtatgccatgaattgtacaacacaatcagagat
tataaggatgaccagggaagaatgttatgtgagctgttcataagagcacccaagagacga
aatcaatcggattactatgacgttgtgactcagcctattgacatgatgaagatccagcag
aagctgaagatggaggagtacgatgatgtggagcagataacggctgactttcagctctta
ttcaacaatgcaaaggcatactacaagtcggattctccagagtacagagcggcctgtaag
ctgtgggacctctacctgcgtactaagaatgagtttgttcagcggggggattatgatgac
gatgatgaggacggggacgatgcacaaaataatcctggagggtcaaatgaggatgagaat
gcacccaattgcctgaaggaggtccttgagcagctgctggatgctgtggtgacattctcc
gagccctcagggcatctcgtcagtgatctattccagaaactgccctctaaagtgcaatac
ccagactattatgccataataaaggacccaatagatctgaaaatcattgcccagaagata
cagatgagccactacagaagtgttggtgccatggcaaaagacatagatcttctggctaag
aatgccaaaatgtacaatgagcctgggtcacaagtttttaaggatgccaacaccatcaaa
aaggtctttgcacagagaaagacagaaattgagcatgctgagccaatcaagtccagtatt
cgcatcaggcaagtaacaccatagacatggtagaaagtagactttacgagtcaaacaaac
aacatgcaacatttagaagcatttttccatgaattaaacagctgtgtgtgtgtcaggaac
agaaggtcagcccagggagaccggctctcagctattaccatggctcttcagtacgatagt
gatgacgatggcattctggctgggtctgtccactatgacgagggggagtcagaggcagag
agcatgcaccacagcatggacatgagtaaccccatcttccagctgtacgaggctgtgcgt
ggcggcaggaacagccagggccaactcatctccgagcccttcctccagctgccctccagg
aaagactacccagactacttccagcagatcagccagcccatctccctgcaccagattagg
aacaagatgaagaacaacgagtatgagagtgttgatcagctagacgccgacctcactctg
atgtttgagaacgccaagcgctacaatgtgcctcattcctctatctataagcgtgtgttg
aaactccagcacattcagcagctaaagagaacagagctattgaggagggaggacgacagc
atggatggggacagcatgctctcttctaccatgtctgatactggcagcactaagaggaag
agccataagaaaaacaccaagaagaaccggatgaaggccctgtactccgcagtgacggag
gcccgggagatgggcacaggccggaggctctgtgagctcttcatggtcaagccttccaag
aaggactacccggactactacaagatcatcctggagcccgtggacctgaggatcatcgac
cacaacatccgctctgagaaatacatgactgaggacgctctgctggaggacatgaagctc
atgttccgcaacgcacgacactacaatgaggagggctcacaggtctataacgatgccaac
gtcctggagaaagtcataaaagacaaacggagggatcttggcccaacgcctgacgatgat
gacatgtcaccaaagttgaaaataaggaagagtggtatcacgcctaagaagtccaagtac
ctgacccccctgcagcagaagctgaacgagctgtacgaggcggtgaagaacttcacagac
aagcgtggccgccgcctcagcaccatcttcctacggcttccatcgcgcgctgaactgccc
aactactacatcgccatcaagaagccagtggacatggaaaaggtcaggagccacatgctg
gccaacaagtaccaggatgtagacgcactggtggaggacttggtgctgatgttcaacaac
gcctgcacctacaacgagccagagtctctgatctaccgcgacgctcttgtgctgcaccgt
gttctgctggagactcgacgggacctggagggaggcgaggacgcccatgtgcccgacgtg
gcccgcctcatccaggagctcatccgcagcctcttcgtctccgtgcttggtcaccaggat
gacgaggggcgttgctacagcgactcgctggctgagatccccgctactgaccccagcagc
cccgacagaccgccgctcaactttgagatcatcagagctaacgtggaccggggacgctac
aagagactggacgtgttccaggatcacatgtttgaggtgctggagaaggccaggcgcatg
cacaggacggactctgagatatttgaggatgcggtggagctgcagcagttcttcatccga
atccgagatgagctgtgtaagaatggagagatcctgctcacccccgccctcagctacacc
tccaaacacctgcacagtgacgtggagaaggagaagaaggagaagctgcccaaggagata
gaggaggacaagctcaagagggaggaggagaagaaagaagctgagaagagtgaggatcct
gctggaggggcgtggcagtctggtctccagcgtacctacagccaggactgcagcttcaaa
gacagcatgtaccacgtgggagactatgtgtacgtggagcctgctgagcccaacctgcag
ccgcatatcgtctgcattgagcgcctgtggcaggatgatgcaggtgagaagtggctgtat
ggctgctggttctacaggccgaatgaaaccttccatctcgctacacgcaagttcctggag
aaggaggtcttcaagagcgactacttcaacaagattcctgtcagcaagatactgggcaaa
tgtgttgtcatgtttgttaaggactactttaagcttcacccagagggcttcagggcagac
gatgtgtatgtctgtgagtctcgctactcagccaagaccaagtccttcaagaagatcaag
atgtggaccatgcccctgagctccgttaggtttgtccctcggggcgtaccgttgcctgta
gtccgggttgcatccatgtttgcccctaaacaagaagaagagaagcctgcagagatacaa
gaagagggcaaagccttggacactatggataaggagagggaggatgtaatcctggacatg
accaatggggagccaggctgccaatactatgagcagctctgctacaatgacacctggctg
aaagtgggagactgcatctatattcgctcacatggactagtgcgccaccgagtaggcagg
attgagaagatgtggatgcgggacggagcggcctacttctttgggcctattttcatccac
ccagaggagacggaacacgagcccaccaggatgttctacaagaaggaagtgttccttagc
aacctggaggagtcttgccccatgacctgtatcatagggaagtgtgcggtgtcctccttc
aaggagtacctttcgtgccggcccacggaagtgcctgaggaggacgttctgctttgtgag
agtcgttacatcgagagtgacaaacagatgaagaaattcaagggtctgaagcgcttctcc
ctctctgggaaggtggtggaggacgagatctattacttcaggaagctgatcgtgccccag
aaggagccatcccccctgctggacaggaagatcgcagtgctggaggccaagtttgccgac
atgacagatgaggagttggaggacctgggggaggatgatggggagctgggagacacctcc
ataccccagctccagagccccatggcaggcagcgacatggacatgccttacacccctcca
caggtcagagcagcaacatacactgggcaaatgtgtggtcatgttgtgaagtccactccc
aagtccatgaaggggatgtccaagaaggagggctccaagaggaagatcaacatgagtggc
tacatcctgttcagcagtgagatgcgagcggtcatcaaggcccaacacccagacttctcc
ttcggggaactcagccgtctggtgggcaccgagtggaggaacctggagtctcccaagaaa
gctgagtatgaggagcgagcagctaaagtggccgagcagcaggagcgggagagggctgcc
cagcagctggctttccctagagcaggcatgatgggttcatatatgccacacatgatgctg
caggacctagttgacggcatgtttagtatgactggcatgccaccacatcacatgaggttg
cctctcttgccccatcatcacctaatgccaggcatccctgggttccctggcatgccatac
ccgggtgtcaacgcgggtgcccctggagcctatggaacccagatgattggtattgggcag
caggccccaccaccctatccaggacagggccagcctgccctccagcagccctcaacaccc
atatttgtagccccgccacccaagccccagcgcctgctccattcggaggcgtacctgaag
tacattgagggactcaatgcagagtcctccaccatcagcaagtgggaccaaactctctca
gctcgaaagaaagatgtgcggctgaccaaagagcaggagagccggctgccgtcccattgg
ctgaagagcaagggcgcccattccaccatggcggacgcattgtggcgtctgcgagacttg
atgctgcgtgacacaatgaacatccgccagacgtacaacctgtag
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