Oncorhynchus nerka (sockeye salmon): 115143177
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Entry
115143177 CDS
T07952
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115143177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115143177
03036 Chromosome and associated proteins [BR:
one03036
]
115143177
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115143177
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115143177
PBAF complex
115143177
GBAF(ncBAF) complex
115143177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
115143177
NCBI-ProteinID:
XP_029539175
LinkDB
All DBs
Position
LG15:complement(36835812..36851236)
Genome browser
AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPTKNFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTP
SSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAASAM
RDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGP
LAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRR
VEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETKENKEGA
MEEGEKQGENGKKEEERGREGEGEGEQEAEKTDSEMGDGEKDKEGKEGSEESQREGESEG
ERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQHSQTGGP
HSAPAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTSIPSSAQPAEPQPPPSGPH
TSPPRPPGQPPTAHSSTTPTLHEPSVPLPEDTHHSSAPVPPPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgacgaagaat
ttcctggactttaagtctggtggggctctctgccacattctggctgcagcctacaagttc
aagagcgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtctggaggaggaggagtgggtgcgtctggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggaccttgaccagtttaatgagtggatgaatgaggaggactatgaggttggg
gaggggggccccaagaggaagagaatctcagccaagaccctgacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgt
gggcccaccaccccgtacactaagtctaagcgaggccagagagaggaggagccggaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacagccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgaca
gacctggatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggc
tctccgagtgtgaagggagagccggtgaaagggtcggaccttcatgaggacaacgtgacc
gagcagacccaccacatcattatccccagctatgctgcctggttcgactacaacagtgtc
catgctattgagcgaagagccctcccagagtttttcaatggcaagaacaaatccaaaacc
cctgagatttacctggcctataggaacttcatgatagacacttacaggctgaacccgcag
gagtaccttacctctaccgcctgtcgtaggaacctggccggagacgtgtgcgccatcatg
agggtgcatgcgttcctggagcagtggggtctgatcaactaccaggtggactcagagagc
cggcccacccccatgggccccccacccacctcccacttccacgtcctggctgacaccccc
tccagcctggtgcccctgcagcccaaggcctcccagactccggcggcccagcagattctg
tccttcccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgagg
acagacatgtacagcaagaagactgggcctcctaagagtaagactgctgccagcgccatg
cgagactggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggat
gactggaacaaggtgtcggagcacgtgggctcacgtacccaggatgagtgtatcctgcac
ttcctgcgtctgcccatcgaggacccatacctggaggacacgtcctcgtccctgggcccc
ctggcctaccagcccgtccccttcagccaggcaggcaaccctgtcatgagcaccgtggcc
ttcctggcctctgtggtggacccccgcgtggcctccgcagccgccaaatctgccctggag
gagttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagg
gtggaagaggcggcgcggaccagtggcagacaggaccccctctacggcctggaaggcagc
ggcatcgcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagt
aaaagtgacagccaatccagtgaagagaagagggagaccaaggagaacaaagagggagcc
atggaagagggggagaagcaaggagaaaatgggaagaaggaggaggagagaggaagagag
ggagaaggagagggagagcaagaggctgagaagaccgactcggagatgggtgatggagag
aaggataaggaagggaaggagggctcggaggagagccagagagaaggagagagtgaggga
gagaggaaggctaaggtggagcgggatgtgggagaggggaacctggctaccgcagctgcc
tctgccctggctgctgctgccgtcaaagccaagcacctggctgctgtggaggagaggaag
atcaagtctctggtggctctgctggtggagactcagatgaagaagctggagatcaaactt
agacactttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccag
aggcagcagctgctggcagaccgtcagtcgttccacatggagcagctgaaatatgcagag
atgagggcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggccca
cactccgccccggcccccactggccccccacccccaccccagggcccctcagccacccag
tcccagccaaccctcagtacccctgcaccacagccagctcccagcccagcaccccctacc
acctccatcccttcctctgcccagcctgctgagccccagccgccccccagtggtcctcac
acctcacctccccgcccgccaggccagccccccacggcccactccagcaccaccccaaca
ctccacgagcctagtgtccctctacctgaggatacacaccactcctcagccccagtgccc
cctccacagtga
DBGET
integrated database retrieval system
