Oncorhynchus nerka (sockeye salmon): 115143263
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Entry
115143263 CDS
T07952
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
one03036
]
115143263
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
115143263
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
ResIII
PHD-1st_NSD
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115143263
NCBI-ProteinID:
XP_029539330
LinkDB
All DBs
Position
LG15:39696462..39749203
Genome browser
AA seq
2064 aa
AA seq
DB search
MMPGSLSNEDEGQDDMDFEDEIPDEDEEGEHNTVPLTSLDSFFSDDDSLKQQKKKKPKKM
KEGKMPKVKKRKKEGGGGGGIGVGGNDPAEQASEREDDHPLQRPEIGSESESSTYAPAPT
TKKKKKKPKEKKEKKPKRKKREEEEEEDDDNDDDDDDDDDDENNKEPKSSSQLMQEWGLE
DVQYGFTEEDYTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGT
SATAVAAAVAAAVEMVTVASPISVKEVTTLPSSQPGPIRKAKTKDGKGPGVRRKTKTVKE
VKKKSKGKKTKSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGNAKKKARKGRKKRK
REDGDGYETDHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEG
IQWEAKDDDDEDEEEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPE
IPNGEWLCPRCMCPPLKGKVQRILHWTWGDPPLPTEVPPGPDGEMVDLLVKPPLKGHPER
ELFVKWAGLSYWHCSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRK
SKDLQYAAMEERFYRYGIKPEWMVIHRIINHSYDKDGDVHYMIKWRDLPYDQCTWEVDDF
DVPEYHHSKHSYWDHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPDAPIIDPTIKFE
HQPWYINATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGH
SKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKDSRAVIRENEFTFEDSTVKTGRK
VFRMKKDSAIKFHVLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYK
IYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPH
MLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKSGGNQVSLLNIMM
DLKKCCNHPYLFPVAAMEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFS
QMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGI
NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMM
LTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLWDIKDGDEG
SVIHYDDNAISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQE
ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEY
SVGSEDEDEDFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNTRQRKAFLN
AIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREG
LSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPLGLELKKLTESLSSDPNTPVPAS
PAATPQPPGTPVPPEKMDSTSGPTEDKETTELEYKKLPELETNLSTESSSQVGKTDKAAD
RDETVKCSTEDKPVSSEESSERTDTPCTLPEPFTNLKEPPSKQTELSSNQSSPKAEPCRE
TEKSLDKGDSDPAPAKPEEKELKPVFSDEPKSEDMPVPEGRLNGEKEAQEETEDIRREVE
KNGFKMRFMFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYAR
WQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMT
QDPNHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHC
LQTQDLVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGNEPPPQ
QPFGQSSFACSQMYSTGFGGSFRGPVGGAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSC
DPLRDVTTPDLKSGKPSDVICIED
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgggtcgttaagcaatgaagacgagggacaagacgacatggattttgaagac
gagataccagatgaggatgaggagggtgaacacaacactgtcccgctcacatctttggac
agcttcttctctgacgacgactccctcaaacaacagaagaagaagaaacctaaaaagatg
aaggagggcaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtggcgga
ataggagttggtggcaatgacccggcggagcaggcctcagagcgggaggatgaccatcca
ctgcaacgtccagagattggctcagagagcgagagcagcacctacgcccccgcccccacc
acgaagaagaagaagaagaaaccaaaggagaagaaagagaagaaacccaaacggaagaag
agagaagaggaggaggaggaggatgatgacaatgatgatgacgacgacgatgatgatgat
gatgaaaataataaggagcccaagtcatccagccagctgatgcaggagtggggtctggaa
gatgtgcagtatggcttcacagaggaggactatacaaccctcaccaactacaaggctttc
agccagttcctcaggccacttattgccaagaagaaccctaagatccccatgtcaaagatg
atgacagtgttaggggccaagtggcgagagttcagcgccaacaaccccttcaaaggcacc
tctgcaactgctgtggctgccgcggtggctgctgctgtggaaatggtcactgtggcctcg
cccatctctgtcaaagaggtgaccaccctaccaagctctcagcctgggccaatcagaaaa
gccaaaaccaaagatggaaaggggcctggggtaagacggaagacaaagactgtaaaggag
gtgaagaagaaaagtaaagggaagaagaccaaatccaagaagaaagcctcctcgagtgaa
gaggactttgggctggaggagtcggactttgatgatgtcagcatccacagtgcctcggtg
cgctctgatacctcggggaatgccaagaagaaagcccggaagggtcggaaaaaaaggaaa
cgagaggatggggacggctatgagacagaccaccaggactactgtgaggtgtgccagcag
ggaggggagatcatcctgtgtgacacctgtcccaaagcttaccacctggtgtgtctggac
cccgagctggagaaggcccccgagggcaagtggagctgcccccactgtgagaaggagggc
atccagtgggaggccaaagatgatgatgatgaggatgaggaagaggaggaggttgcggtt
gaggaagaggatgaccacctggagttctgcagagtgtgtaaagatggaggggagttgctg
tgctgtgacacctgcccctcctcctatcatatccactgcctcaaccctcccctgcctgag
atacccaatggggagtggctgtgcccacgctgcatgtgcccacctctgaaggggaaggta
cagaggattctccactggacttggggggatccccctttacccactgaggtgccccctggc
cctgatggagagatggtggacctgctggtcaagccccccctgaagggccacccggagagg
gaactgtttgtcaagtgggctggtctctcctactggcactgctcctgggtcagcgaacta
cagttagagctgtaccatgcggtgatgtaccgtaactaccagcggaagaacgacatggac
gagccccctccgtacgactacggttctggggaggaggagctgaacaacgagaagaggaag
agtaaagacctgcagtatgctgccatggaggagagattctaccgctacggcatcaagcca
gagtggatggtcatccacaggatcatcaaccacagttatgataaggatggagatgtacac
tacatgatcaagtggagagacctgccctatgaccagtgcacctgggaggtggatgacttt
gatgtccctgagtatcaccacagcaaacactcctactgggaccacagggagcagatgatt
ggtgatgaccagcgccccttagtggtgagaaagggaaagaagggcaaagaggaggagaag
aggagagagagagaaatcccccccgatgccccaattatagatcctaccatcaagtttgaa
catcaaccctggtacatcaatgccactgggggcaccctgcatccgtaccagctggagggt
ctgaactggttacggttctcctgggcacagggcacagacactatcctggcagacgagatg
ggcctgggcaagactgtccagaccatcgtgttcctctactcgctctacaaggagggtcac
tccaaagggccatacctggtcagtgcccccctgtccaccatcatcaactgggagagggag
tttgagatgtgggccccagacttctacgtggtcacttacactggggacaaagatagccga
gcggtcatcagggagaacgagttcacttttgaggacagtacagtcaagacaggccgcaag
gtcttccgtatgaagaaagacagtgccatcaagttccatgtgttgttgacatcatatgag
ctgattaccattgatcagaccattctgggctccattaactgggcctgtctagtggtggac
gaggcccacagactgaagaacaaccagtcaaagtttttcagaatcctcaacggttataag
atctactataagctgctactgactggcactcctctgcagaacaacctggaggagctgttt
cacctcctcaacttcctcaccccagagagatttaataacctggagggctttctggaagag
tttgcagacatctccaaggaggaccagatcaagaagctgcatgacctgctgggcccacac
atgctcaggagactgaaggctgatgtcttcaagaacatgccttccaagacagagctcatt
gtacgagtggagctcagccccatgcagaagaagtactacaagttcatcctgacgcggaac
tttgaggcgctcaactccaagagcgggggcaaccaggtgtcccttctcaacatcatgatg
gacctgaagaagtgttgcaaccacccctacctgttcccagtggcagccatggaggcgcca
gtgttacccaatggctcttatgatgggaaccagctggtcaagtcctcaggcaaactcacc
ctgctccagaagatgctgaagaaactcaaagatgaaggacacagagttctcatcttctcg
cagatgactaagatgctggatctgcttgaggactttctggaatatgagggctacaaatat
gaacgcatcgatggaggcatcacaggggggctacgacaggaggctatcgaccgcttcaat
gcaccgggcgcacagcagttctgcttcctgctctccacccgagctggaggcctgggcatc
aacctagccacggcagacaccgtcatcatctacgactcagactggaaccctcacaacgat
atccaggcattcagcagggcccaccgtataggtcagaacaagaaggtgatgatctatcgc
tttgtgacacgggccagcgtggaggagcgtatcacccaggtggccaagaggaagatgatg
ttgacccaccttgtggtgaggcccggcctgggctccaaaaccggctccatgtccaaacag
gagctggacgacatcctcaagtttggcactgaggagctcttcaaggatgagatggaggcg
gccgctcgggccatgggttcccaccagaaactgtgggacataaaggatggagatgagggc
agtgtcattcactatgatgacaatgccatctccaagctgctggaccgtagccagaatgcc
acggaggacactgagatccagaacatgaacgaatacctcagctccttcaaggtggcccag
tatgtggtcaaagacgaggacgcggaggaggagccccagcgggagatcattaagcaggag
gagaatgtggatccagactactgggagaagctgctgaggcaccactatgagcagcagcag
gaggacctggcccgtaacctgggcaaaggcaaacgcatccgcaagcaggtcaactacaac
gacacgtctcaggaggaccaagagtggcaggatgatctttcagacaatcattccgagtac
tccgtggggtccgaggacgaggacgaagatttcgaggagaggccggaaggtgggcgcagg
cactctcgcagacagctgaagagtgacagggacaaacctctgccacccctgctggcacgc
gtagggggcaacatcgaggtgctggggttcaacacccgtcagcggaaggccttcctcaat
gctatcatgcgctggggcatgcctcctcaggacgccttcaactctcactggctggtcaga
gacctgagagggaagagtgagaaagagttcagggcctatgtgtccctgttcatgagacat
ctttgtgagccgggggcagacggagcggagacctttgcagacggtgtcccacgagagggg
ctgtcccgccaacatgtcctcaccaggatcggagttatgtctctggtcaggaaaaaggtc
caggagtttgagcatgtcaatggaaagtacagcactccagacctgatcccacttggacta
gagttgaagaaactgactgagagtctgtcctctgaccccaacacccctgtccctgccagc
cctgcagccacaccccagcctcctggcactcctgtcccaccagagaagatggactcaacc
tcagggcctactgaagacaaggagaccacagaattagagtacaagaaactaccagaactg
gagactaatctaagtacagagtcatcttcccaggtagggaagacagacaaggctgctgac
agggatgagacagtgaagtgcagcacagaggacaagccagtctcctcagaggagagtagt
gaaaggacagacacaccctgcacacttccagagccattcaccaatcttaaagagcctcca
tccaaacagacagagctgtcgtccaatcaaagctcaccaaaagcggagccttgtagagag
acagagaagtctttagataaaggagacagtgatcctgccccagccaaacctgaggaaaag
gaactgaagccagttttttcagacgagcccaagagcgaggacatgccagtgcccgagggc
aggcttaatggtgagaaagaagcacaggaggagacggaggacatcaggagggaggtggag
aagaacggcttcaaaatgaggttcatgttcaacatcgccgacggaggcttcacagagcta
cacaccctgtggcagaacgaggagcgggccgctgtgtcatctgggaagatgtatgacatc
tggcaccgtcgccacgactactggttgctggctggcatcgtaacacatggctatgcccgc
tggcaggacattcagaacgacccacgttatgccatcctcaatgagcccttcaagactgag
atgcacaaggggaactacctggagatgaagaacaagttcctggctcgccgctttaagctg
ttggagcaggctctggtgatagaggagcagttaagaagggcagcgtacctgaatatgacc
caggaccccaaccacccggctatggccctgaatacccgctttgctgaggtggagtgtctg
gctgagtcccaccagcacctgtctaaggagtctctggccgggaacaagccagccaacgct
gtgctgcacaaaggtctgtcatctcccagtgtgtacacagcagcaggactaaaacactgt
ctacaaactcaagatctggtactgaaccagctggaggagctgctgagtgatatgaaggca
gatgtgacgcggcttcccaacatgttgtcccggatccccccggtgtctgcccgtctgcag
atgtctgagaggagcatcctcagccgcctcaccagccgcggcaatgaacctccgccccaa
cagccgttcggccagagctcatttgcctgttcccagatgtacagcactggttttgggggc
agcttccgggggcctgtgggaggagccatggtcaactacagccagatgcccctgggaccc
tacgtcagtgtgtccaacggccccccacccccgtccagccacctggacaagaagtcctgc
gacccgctgagggacgtcaccacccctgacctcaagtcaggcaagcccagtgatgtcatc
tgtattgaagattag
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integrated database retrieval system
