Oncorhynchus nerka (sockeye salmon): 115143325
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Entry
115143325 CDS
T07952
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115143325 (tmf1)
Membrane trafficking [BR:
one04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
115143325 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
115143325
NCBI-ProteinID:
XP_029539480
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All DBs
Position
LG15:complement(44883768..44893749)
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AA seq
1170 aa
AA seq
DB search
MSWFSSTQLSSFAKQALTTAQKSIDRVLDIKEDEWGDTVVMPYDDLPGKTPLSGGWGMTQ
WDSPPEECTTTLPPSSEAITTPVTRMVVDETENFFSAFLPSGELQGVMDTQVVSVPPTKS
LRRPQEKDEEDKDHVDPHKTGLTETNRLEDQEATENQAVLTESSSLWSSSEIVLVQTPEP
PVLAQGDSPDDTDSPLISESWIESTVDDTTAVSEDARTEQPFTPSETQHDYDDHISEPTV
NTELEPPFNPSPPTPPREILLEAKDPKAGDRQSDTPSPKSEDRQSNTPSPPVSAFSSGTS
TTSDIEVLDHESVQSESSASSRQEIAEAKAGLHLMQGSFQLLSASACGDFPRLEDYPKLT
ESCGSSSDAFERIDSFSMQSLDSRSVSEVNSDDEIPGSRTLASVTAGPTPSPPVRVATTA
QEREEEEEKQQEEEEDEEGLTETMKDQSLDENEMEESGRSATPVNSEQPEDLIEQESEAD
VTLSGPTPDHEEQLPPPITEEKRGVSTCQILELQKVIDELSSRLEKRELQLLSVSKDKAR
LEEECDNLKDEVIGLKEESSSVQSLKEEFTQRIADTERKAQLACKERDIAKKEIKGMREE
LSTRLNSNETMEIIREKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKEKESETKITKQN
KKLKDQEEELKHLQQVLDEKEEVEKQHRDNIKKLNVVVERQEKDMTKLQSDSEELLENNR
SLQAALDNSYKELATLHKAKASHASEAQEAALSRETQAKEELALALVKAQEEARMQQDAL
VNQVADLRLALQRAEQQQARKEDYLREEISDVQQRLQGAETRNQELSQSVTSATRPLLRQ
IENLQASLGGQTASWEKLEKSISDRLVEAQAQLAVAVEKERAATEELMAIKAQLVSLESQ
NSLLRQEKGRLHGQLDAEKTRREKLEDDSSREHVELENLRGEHTRTQEEAKKEKLLLTNQ
LEMEKMKVEQEKKKCYLAQEALKEKVDLFINERKVLVHSVGEPPASSTPSLSRSSSISGV
DHAGLHSSFSQEDSLGHSLGTMTMSMSGTNLYEAARLSGGSSIIENLQSQLKLREGEIAQ
LQLEIASLERTRSSMAEEMVRLTNQNEEMEDSVKEIPTLKVQLQELEQRHNTILQMYGEK
AEEAEELRLDLEDVKNMFKTQIDELLKNQK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcagttctacccaactgtcaagctttgccaaacaagctttgacaacagct
cagaagtccatcgaccgagtactggacattaaagaagacgaatggggtgacacagtggta
atgccttatgacgatctaccagggaagactccattgagtggtggatgggggatgacacaa
tgggactctcccccggaggaatgcaccacgactctccccccatcatctgaggccatcacg
acccctgtcacccgcatggttgtggatgaaacagagaacttcttcagtgcttttctgccc
tcaggagagctccagggtgtcatggacactcaggtcgtctctgtgccgcccaccaagtcc
ctcaggcgaccacaggagaaggatgaggaggacaaggaccacgtggaccctcacaagaca
ggcctgacagagaccaacagactggaagaccaggaagctactgagaaccaggctgtcctg
actgagtcctcaagtctatggtcttcctctgaaattgttctcgttcagacaccagagcct
ccagtcctggctcagggtgattctcctgatgacactgacagtccactaatcagtgagagc
tggatagaatcaactgtggatgatacaactgctgtttctgaggatgcacgaaccgaacaa
ccatttactccctcagaaacccaacatgattatgatgatcacatctctgaacccaccgtc
aacactgaactagagccccccttcaatccatctcctcccacaccccctagggaaatctta
ttggaggccaaagaccccaaagcgggggacaggcagagtgacacaccctcccctaaatcg
gaggacagacagagcaacaccccctcccctcctgtcagcgccttctcctcaggcacctcc
accaccagtgatattgaggttttggaccatgagagtgtacagagtgagagttcagccagt
tccaggcaggagatagcagaggccaaagcaggcctccacctgatgcagggctccttccag
cttctctcagcctctgcctgtggggacttcccccgcttggaggactaccccaagctgacc
gagagctgtggatcctcctcagatgcctttgagcgcatcgactcgttcagcatgcagtcc
ctggacagccgcagtgtcagcgaagtcaattctgatgatgagatcccagggagccggaca
ctggcatctgtcaccgcagggcccacgccttctccgcctgtcagagtggcaaccactgca
caggaacgggaagaggaggaggagaagcagcaggaggaggaagaagatgaagaggggcta
acagaaacaatgaaggatcagtctctggatgagaatgagatggaggagagtggtcgcagt
gccacacctgttaacagcgagcagcctgaggacctaatagaacaggaatcagaggcggac
gtcacgctgtcaggtcccacccctgaccatgaggaacagttgcccccaccaataacagaa
gagaaaagaggggtgtcaacatgtcagattctggagcttcaaaaggtaattgatgagctg
tcaagccgccttgagaagagggagttacagctgctgtcagtcagcaaagacaaagccagg
ctggaggaggagtgtgacaaccttaaagatgaggtgataggtcttaaggaggagagttcc
agtgtgcagtctctgaaggaggagttcacccagcgcatcgcagacacagagaggaaagcc
cagctagcgtgcaaggagagggatattgccaagaaggagataaaggggatgagggaagag
ctgtccaccagactgaactccaacgagactatggagatcatcagagagaaggaggagcag
atccgcgaactgctggaggagggtgagaagctgtccaagcagcagctgcagcactccaac
atcatcaagaagctgcgtgtgaaggagaaggagagcgagaccaaaatcaccaaacagaac
aagaagctgaaagatcaggaggaagagctcaaacacctacagcaggttctggatgagaag
gaggaagtggagaagcagcacagggacaacattaagaagctgaacgtggtggtggagcgc
caggagaaggacatgaccaaactccagagtgactcagaggagctcctggaaaacaacagg
agcctgcaggctgccctcgacaactcctacaaggaactggctacactgcacaaagccaag
gcaagccatgccagcgaggcccaggaggctgctttgagcagggagacccaggccaaggag
gagctggctctggccctggtgaaggcccaggaggaggcccgcatgcagcaggatgctctg
gtcaaccaggtggctgatctgcggctggctctgcagagggctgaacagcagcaggccagg
aaagaagactacctgagggaggagatcagtgacgtgcagcagagactgcagggggcggag
accaggaaccaagagctgagtcagagtgttacctctgcaacgcggccgctgctcagacag
atcgagaacctgcaggcctcgctggggggccagacggcatcatgggagaaactggagaag
agcatctcagatcgactagtggaagcacaggcccagctggctgttgccgtggaaaaggag
cgtgcagcaactgaggagctcatggctattaaggcccagctggtctcactggagtcccag
aattccctgcttcgacaagagaaagggcgtctccacggtcagctggacgcagagaagacc
aggcgggagaaactggaggatgacagcagcagggagcatgtggagctggagaatctgagg
ggagagcacactcgaacacaggaggaggccaagaaggagaagctcctcctgaccaatcag
ctggagatggagaaaatgaaggtggagcaagagaagaagaaatgctacctagcacaagag
gccctgaaggaaaaggtagatctatttatcaatgagcggaaggtattggttcactctgtg
ggtgagcccccagcctcatccaccccctccctgtcccgttccagctccatcagtggggta
gaccacgccggcctgcactcctccttctcccaggaggactctctgggtcactcattgggg
acgatgacgatgtctatgagtgggaccaacctgtatgaggcggctcggctcagtggaggc
tccagcatcatagagaacctgcaatcccagctcaaactccgagagggagagatagcacag
ctacagctggagatcgctagtctggagaggactcgctcgtccatggcggaggagatggtc
agattgaccaatcagaatgaggagatggaggacagtgtgaaggagatccccacactgaaa
gtacaacttcaggagctggagcagagacacaacaccatcctccagatgtatggagagaag
gctgaggaggcagaggagctgagactcgacctggaggacgtcaagaacatgttcaaaacc
cagattgacgaactgctcaagaaccagaagtag
DBGET
integrated database retrieval system
