Oncorhynchus nerka (sockeye salmon): 115143348
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Entry
115143348 CDS
T07952
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115143348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115143348
03036 Chromosome and associated proteins [BR:
one03036
]
115143348
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
115143348
Coactivators
SAGA/TFTC/STAGA complex
115143348
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
115143348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
115143348
NCBI-ProteinID:
XP_029539526
LinkDB
All DBs
Position
LG15:45905689..45918956
Genome browser
AA seq
973 aa
AA seq
DB search
MLMSSRTNGDLLKRLQKQVCCVNVVLLVVSSVNESKHSLVCSPPSLTRVSAPQQGLECKG
GVIISNTWSQGSAMDASSSESDSSARHGQGKTVAVSASIITPLPNHGGKVASSATQTLNG
GSLMNCHNSGSAVSLTGTPLSSSCTSSGNASVAVTVVNNGPGLSKGHASAVMPPSLNTTI
IQTSFVNSPNVVTSSHAASLGTGPAISHIVRPSMQTAGSGTAMNNAGLPFDCLNNGQSPS
SVAVSAGSHIIMAEAPKTSIQTVSCAVTNPSFQSAPRASTPVTVGVSPGGSRSIAQQVLA
PRHPQTSTNQPNVQNIQLPPGMVLVRSESGQLLMIHQQTLAQMQSQSQSQGVMAPRPATP
TSTPPFQITSVQAPGTPILTRQVTPTTIIKQGSPVPTSAPVTTTLQNPPVTTTLQRPPVL
QSPMIVVGAAAGTSMGTALPGATQRTVTASPGTTVTLATETMENVKKCKNFLSTLIKLAS
SGKQSSETAANVKDLVKDLLEGKIEVEDFTNRLYRELNSSPQPYLVPFLKRSLPALRQLT
PDSAAFIQHSGLQQQASATTPTTVVLDSPALRPAAPTIRPHLQSVISKQGLTTPMVLQPR
KQGAMVRPLQMTPMVTLRGPPPHSHIMLGQPQVQLKQLQTVPVVNPGVLTGSKSSPGAAS
LATVVQKNKLKEAGGTFRDDDDINDVASMAGVNLSEESARILATNSELVGAVTRSCKDEA
FLHTSTLTSRILEIGKKFGVSDLGPEVVNYVSHASQTRLQNLLEKVSEVAQQRNINFKED
SRYEQTSDMRAQIKFFEQLDQMEKQRKEEQEREILMKAAKSRSRQEDPEQLRLKQKAKEV
RGMDRLMRIWHNKICVTEVSIVGVCLCRPISCICVCLQMQQQELFQLRQKEANLTALAAI
GPRKKRKMEAAAAAAGAEGSGSSPAASGSGSSGASRQFIRQRITRVNLRDLLFCLENERD
TSHSHLLYKGFLK
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgctaatgtccagcagaacaaacggggacttgctcaagaggttgcaaaagcaggtatgc
tgtgttaacgttgttttgcttgttgtttcaagtgtaaacgaaagcaaacactcgcttgtt
tgttcacccccttctctcacccgtgtttccgctccacaacaggggctggagtgcaaaggg
ggtgtcattattagtaatacgtggtcccagggttcagctatggatgcctcatcgagtgag
tcggactcatcggcacgacacggccaaggaaagactgttgctgtcagtgccagtataata
actcctctcccaaaccacggggggaaagtagcctcttccgcaactcaaactttgaatgga
ggcagtttaatgaactgtcacaattcaggaagcgctgtctctctcactgggacaccgcta
tcaagtagttgcacgagtagcggcaatgcctcggtagctgtcacagttgtcaacaacggg
ccggggttgtcaaaaggacatgcgagcgcagtaatgccaccttcattgaacaccactatc
atccagacatcattcgtgaactctccgaatgttgtcacctcgtctcacgctgcgagtctg
ggcactggacctgccatatcacatattgtgaggccatctatgcaaactgcgggatctggt
acagcgatgaataatgcgggattgcctttcgattgcctgaacaatggtcagtcgccctcg
tctgtggctgtcagtgcggggtcgcacataatcatggcagaggcgcccaaaacaagcata
cagactgtttcatgtgctgtaacgaacccgtcgttccagagcgcaccgagggcttccact
ccggtgacagtgggtgtgagcccgggagggagccgttctatcgcgcaacaggtgttggcg
cctcggcacccccagacatccacgaaccagcccaacgttcagaacatccagcttccccca
ggtatggtcctggtgcgcagtgagagtgggcagctgttgatgatccaccagcagaccctg
gctcagatgcagtcccagtcccaatcccagggagtcatggccccccgcccagccaccccc
accagcactcctcctttccagatcacctcagttcaggctcctggaacgcccatcctcact
aggcaggtgactcccaccactatcatcaagcagggctcacctgtgccaacctctgctcct
gtcaccaccacactccagaatcctcctgtcaccaccacactccagaggcctcctgtccta
cagagtcccatgattgtggtaggggctgctgcaggcacttctatggggacagcgctacca
ggggccacccagaggaccgtcaccgcatcacccgggaccactgtcaccttggcaacggag
acgatggagaatgtgaagaaatgcaagaacttcctgtctacattaatcaagctggcgtcc
agcgggaagcagtcctcagagactgccgccaacgttaaagacctggtcaaagatctcctg
gaagggaagattgaagtcgaggacttcacaaacaggttatacagagagctcaactcctca
cctcagccttacctcgtgcctttcctcaagaggagccttcctgctctgcggcagctcacc
ccagactcagcagccttcatccagcacagtgggctccagcagcaggcctctgccaccacc
ccaaccactgtggtactggacagcccagccctgcgccctgcagccccaaccatcagacca
cacctccagtctgtcatcagcaaacaggggctgactaccccaatggtgctccagcctcgg
aagcagggggcaatggtaaggcctcttcagatgacccccatggtgaccctcagaggaccg
cccccccacagtcacatcatgctgggacagccacaggtgcagctcaaacagctacagaca
gtccctgtagtgaatcctggagtgttgactggatctaagtcgtctcctggtgctgcctct
ctggccactgtagttcagaagaacaagctgaaggaagctgggggcacattcagggatgac
gatgacatcaatgatgtggcatctatggctggggttaacctgtctgaggagagtgcccgt
atcctggcaaccaactccgagctggtgggagcggtgacacggtcctgtaaggacgaggcc
ttcctccatacctccacactgaccagtagaatactggaaataggtaagaagtttggtgtg
agtgatcttgggccggaggtagtgaactacgtgtcccacgcttcccagaccaggcttcag
aacctgttggagaaagtctctgaggtggcccagcagaggaacatcaacttcaaggaggac
agtcggtacgagcagacgagcgacatgcgtgcccagatcaagttctttgagcagctggat
cagatggagaaacagaggaaagaggagcaggagagagagattctgatgaaggcagcaaag
tctcgttctcgtcaagaagaccctgagcagctgcggttgaaacagaaggccaaagaggta
agagggatggataggcttatgagaatttggcataataaaatatgtgtcaccgaagtgtcc
atagtaggggtgtgtttgtgtaggcctatctcgtgtatatgtgtttgtctccagatgcag
cagcaggagctgtttcagttgagacagaaggaagctaacctgacggcgctggcagccata
ggccccaggaagaagaggaaaatggaggctgcagccgctgcagctggagctgagggctca
gggtccagtcccgctgcgtctggtagtggtagttcaggagcatccagacagtttatccgc
cagcgcatcactcgtgttaacctcagggacctgctcttctgtttggagaatgagagagac
accagtcactcccatctcctctacaaaggcttcctcaaatag
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