Oncorhynchus nerka (sockeye salmon): 115143352
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Entry
115143352 CDS
T07952
Name
(RefSeq) cadherin-4-like isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
115143352
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115143352
Cell adhesion molecules [BR:
one04515
]
Cadherins
Major cadherins
115143352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Fibulin_C
DUF4064
Stevor
DUF6479
DUF5385
Motif
Other DBs
NCBI-GeneID:
115143352
NCBI-ProteinID:
XP_029539530
LinkDB
All DBs
Position
LG15:complement(45931447..46265386)
Genome browser
AA seq
926 aa
AA seq
DB search
MNFVSVVILTCTLLVETSWGTKAGQPPKPPCRPGFSESFYTVFVSRDLLRGQSILKDTSL
SSERVKFEDCQHSKAVGFESSDPNFSVRPDGSVYAEQEVANLSEPIQFMVTARGGHDPHI
WETTVKLALVGHQPSVPVSQIGVEDMIARAWDSNPRVIKFPRKHQKSSSANGLRRQKRDW
VIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFV
TRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSK
PGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTMAAGLDREK
VSQYIIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENSVNVVVA
NLTVIDRDQPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLT
VIVSNKAPLASGIQSSLQSSAGVTISVQDVNESPVFPTNPKSIRFEEGVPAGTTLTVFAA
QDPDLFIQQTVRYSKLSDPANWLRINRTNGQITTMAVLDRESMYVRNNIYEATFLAADNG
SPPASGTGTLQIHLIDVNDNAPVMMPKEAQLCERANPRSKVNITASDADADPHVGPFVFE
LPSYPPSIRRNWTISRISGDYAQLRLRIPYLDAEVYDVPIIVSDSGNPPLSNRSIIKVKV
CPCDDNGDCTTTGAVAAAGLGTGAIIAILICIIILLILVLVFVMWMKRREKERQAKPLLI
DPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESVEHIISKPVGVRRVDERPIIAESQY
PVRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGD
QDYDYLNDWGPRFKKLADLYGGGKDD
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgtatcggttgttatactgacgtgcaccttacttgtggaaacatcttggggg
accaaggcaggccaacctcctaaacccccatgcagaccaggcttctctgagagcttctac
actgtgtttgtctcgagggatctactgcgaggccagagcattctcaaagacaccagccta
tcgagtgaacgtgtaaagtttgaggactgccagcacagtaaagcagtgggcttcgagagc
agtgaccctaacttcagtgtgcgccctgacggctcggtgtacgcggaacaggaagtggcc
aacctgtcagaaccgatccagttcatggtgaccgcccgcggaggtcatgaccctcacatc
tgggagaccacggtcaagctggccttggttggacaccaaccctctgtccctgtgagtcag
attggagtggaggatatgattgcaagggcctgggactctaatcccagggttatcaagttt
ccacggaaacatcaaaaaagctcctctgccaatggactgagacgacagaagcgggactgg
gtcatcccaccaatcaatgtgcctgaaaactccagaggacccttcccacaaatgcttgtc
agaatccgctcggaccaggacctggagaaagggatacgctacagcatcactggagcaggg
gcggaccagcctcccattgacgtgtacaacattgaccctgtgcacggcaagatgtttgtc
accagacccctggacagagaggagagggcctcctaccatctgcgggcccatgctgtggac
atgaatgggaacaaggtggaaagccccatagacctatacatctacgtcatcgacatgaat
gacaaccggccagagttccagaaccaggtctacaatggctctgtggctgaaggctcaaag
ccaggcacgttggtgatgcaagtgacagccaacgactcagatgatgacaccacagccaat
gggatggtgcgctaccggatcctgtcccagaccccccacatgcccatccccaacatgttc
accatcaacagtgagacgggagacatcttcaccatggctgctggcctggacagggagaaa
gtgtcccagtacatcatcatcgtccaggccacggacatggaggggaacctgaactttggc
ctgtccaacacggccaccgccctcatctctgtaaccgacatcaacgacaatcctcccgag
ctgaccgccaggacgttttcgggggaggtcccagagaacagtgtgaatgtggtggtggcc
aacctgacagtgattgacagggatcagccccacagccctaactgggctgcccagtaccgc
atcgccagcggagacccccagggtcacttcctcatccgcaccaaccctgtcaacaacgac
ggcatggtcactgtggtcaagccggtggactatgagcagaacagggccttcatgctgact
gtgatagtctctaacaaggcccccctggccagtgggatccagtcttctctccagtcttca
gcgggggtcaccatatccgtacaggacgtcaacgaatcccctgtcttccccaccaacccc
aagtccatccgttttgaggagggtgtccctgcaggcaccacactcactgtgtttgctgcc
caagaccctgacctcttcatccagcaaactgtcaggtactccaagctgtctgaccccgct
aactggctgaggatcaacaggaccaatggtcagatcaccaccatggctgtgctggacagg
gagtctatgtacgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggt
tctcccccggccagtggaacaggtactctgcagatccatctgatagatgtgaatgacaat
gctccggtgatgatgcccaaggaggcccagttgtgtgaacgcgccaatccccgctccaag
gtcaacatcacagcctccgatgccgacgctgacccccatgtggggccctttgtgtttgag
ctgccctcctacccccccagcatccgacgcaactggaccatctcccggatcagcggtgac
tatgcccagttgagactgaggattccctacctggatgcagaggtgtatgatgttcccatc
atcgtgtcggactccggtaacccgcccctctctaacaggtccattataaaggtcaaggtg
tgtccgtgtgatgacaacggagactgtactaccaccggagctgtggctgctgccggactg
gggaccggagccatcatagccatactcatctgcatcatcatactgcttatcctggtgcta
gtgtttgtgatgtggatgaagcgcagggagaaggagcgtcaggccaagcccctgctgatc
gacccagaggacgacgtcagagacaacattctgaagtacgatgaggagggaggaggagag
gaggaccaggactatgacctgagccagctgcagcagcctgagtctgtggagcacataatc
agtaaaccagtgggggtgcgcagggtggacgagaggcccatcatcgctgagtcccagtac
cccgtcagacccagcctgccccaccctggagacatcggagacttcataaacgacggtctg
agggcggcggacaacgaccccacggccccgccctatgactccctgctggtgtttgactat
gagggcagtggctccacggccggctctgtcagctccctcaactcctctagctcaggagac
caggactacgactacctcaacgactggggcccccgcttcaagaagctggcagacctctac
ggcgggggaaaggacgactga
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