Oncorhynchus nerka (sockeye salmon): 115143528
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Entry
115143528 CDS
T07952
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115143528
03015 mRNA surveillance pathway
115143528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115143528
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115143528
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
115143528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
New_glue
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
115143528
NCBI-ProteinID:
XP_029539890
LinkDB
All DBs
Position
LG15:54715000..54724703
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AA seq
506 aa
AA seq
DB search
MSTDSWAQAVDEQEAAAESIGSLQIKDKPEENGTANAALATTATTTTTTTTTTNTAAASA
TTLAKTGGGEGDKTGEEDDKDDKAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKS
FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML
SHVDPNNKFPQALCVSPTYELALQTGKVIEQMGKHYSEVKLVYAIRGNKLQRGTQLQEQV
VIGTPGTMLDWCLKFKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKQCQMLLF
SATFEETVWNFAQRIVPDPNIIKLKREEETLDTIKQYYVLCNSKEEKFMALCNIYGAITI
AQAMIFCHTRKTAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFRDGKEKVLVTTNVC
ARGIDVEQVSVVINFDLPVDRDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRFSMNVLN
KIQDHFNKKIEKLDTDDLDEIEKIAG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccgactcctgggcccaggctgtggacgagcaagaagccgcggcggaatcgatc
ggtagcctacaaatcaaagacaagcccgaggaaaatggtactgccaacgctgcattggcg
acgacagcgacgacaacaacaacaacaacaacaacgacaaacacagcagccgccagcgct
acaacgcttgcaaagaccggaggaggagagggagacaaaacaggggaggaggatgataaa
gatgacaaggcggcacagtcgttattgaataagttgatacgcagtaatctagtgaacaca
accaatcaagtagaagttctacagagggatcccaactctccactttactctgtcaaatcc
ttcgaggaactacggcttaaacctcagctgctccagggagtgtacgccatgggcttcaac
cgaccctccaaaatccaagagaacgcattacccatgatgctcgctgaacccccacagaac
ctgatagcccagtctcagtcagggacagggaagactgctgcctttgtcctggccatgctc
agtcatgttgatcccaacaacaagttcccacaggctctctgtgtgtctcctacctatgag
ctggccctgcagacaggaaaggtaattgagcagatggggaagcactactcagaggtcaaa
ctagtttacgccatcagaggaaacaaactgcagagaggtacccagctccaggagcaggtt
gtgatagggactccaggcaccatgctggactggtgtctgaagttcaagttcatcgacccc
aagaagatcaaagtgtttgtcctggacgaagctgacgtcatgatcgctacacagggtcat
caggaccagagtatacgcattcagaggatgctacccaaacagtgccagatgctgctattc
tctgccacgtttgaggagacggtgtggaactttgcccagcgcatcgtcccagaccccaac
atcatcaagctgaaacgggaggaggagacgctggacaccatcaagcagtactacgtcctc
tgtaacagcaaagaggagaagttcatggccctctgcaacatctacggagccattaccatc
gctcaggccatgatcttctgtcataccaggaaaacggcggggtggttggcaggtgagctg
tcccgggagggccaccaggtggcgctgctcagtggggagatgcaggtggagcagagagct
gctgtcatcgaccgcttccgagacggaaaggagaaggtcctggtcaccaccaacgtctgt
gccagaggtattgacgtggagcaggtttccgtggtgataaactttgacctgccggtggac
agagacggtaacccggacaacgagacttacctgcatcggattggccgcacgggtcgtttt
gggaagcggggattggccatcaacatggtggacagcaggttcagcatgaacgtcctaaac
aagatccaggatcacttcaataagaagatcgagaagctggacactgatgatctggatgag
atagagaaaatcgctggctga
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