Oncorhynchus nerka (sockeye salmon): 115143932
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Entry
115143932 CDS
T07952
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04514
Cell adhesion molecule (CAM) interaction
one04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
115143932
04517 IgSF CAM signaling
115143932
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
one04515
]
115143932
Cell adhesion molecules [BR:
one04515
]
Immunoglobulin superfamily
NGL family
115143932
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
ig
LRR_14
V-set
Ig_2
LRR_NXF1-5
LRRNT
DUF7617
Pam3_Gp34
Motif
Other DBs
NCBI-GeneID:
115143932
NCBI-ProteinID:
XP_029540268
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Position
LG16:complement(4232800..4252868)
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AA seq
751 aa
AA seq
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MHVVMMTSPSTPSPLLWLVQLLLWLHHHGPQLTEAVPPCPNPCSCSNQASRVICTRKSLE
DVPDSISVNTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPVLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSSSDSSNPYSFFTTVTVETVETNNGEDAGRQYINETYVPPDYLGP
TFSGGVLGKGRAGFTISPSRSSLHSFSPRATRNTENTVTVSIMDVTNITGLDDVMKTTKI
IIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGSGISGGST
MQSGCGGDGTLRMHHPEIVNLPNIGRSEHLNHYYKANHFNNNVMGLSIGTGAGVGTLSNK
NNLSPLNQQGQDIPISCTQVPIPSATFQTMSGNGTNTNPLSVSPPLPMSLPMPPMGLHGS
IKGFMGQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgtcatgatgaccagcccctccaccccctcccccctcctctggttggtccag
cttttgctgtggcttcaccaccatggacctcagctgacagaggccgtgcccccatgtccc
aacccctgtagctgctccaatcaggcaagccgcgtcatctgtacaaggaagagtttagag
gacgtaccagacagtatatctgtgaacacaagatacctcaacttacaagagaacacgatt
caggtgataaagtcagacacgttcaagcacctgcggcatttggaaatactgcagctctcc
aagaatcacatccgacagattgaggtgggcgcgttcaatggcctgccaaacctcaacacc
cttgagctctttgacaatcgcctcacgctggtaccatcgcaggcctttgagtacctcagc
aagctgcgggagctctggctacggaacaaccccatcgagacactgccagcgtacgccttt
caccgcgttccctccctgcgccggctcgacctgggcgaactcagaaagctggactacatc
tctgaggccgcctttgagggcctggtcaacttgcgcttcctgaacctgggcatgtgcggc
ctgaaggacatccccaacctcacacccttggtcagactggaggagctggagctgtcagga
aaccagctggggatcgtcaggccgggctccttccagggcctggtgtcactgcgcaagctg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggagctcaacctgtcccacaactctctgcattcactgccccacgacctcttcacc
ccgctgcaccagttggagcgggtgcaccttaaccacaacccctgggtgtgcaactgcgat
gtcctgtggctcagttggtggctcaaggagacagtgcccagtaacaccacatgctgtgcc
cgttgccacgcgcccccagtcctgaagggccgctacatcggtgagctggaccagagccac
ttcacatgctacgctcccgtcatcgtagagccacccaccgacctcaatgtcacagagggt
atggccgcggagctgaagtgtcgcactggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacccatggatcgtaccgcgtcaggatctcagtccttcacgac
ggaaccctgaatttcaccaacgttactgtgcaggacacgggccaatacacctgcatggtg
accaactctgcaggcaacaccacggcgactgcagtgctcaacgtgtcctcctccgactcc
agcaacccctacagcttcttcaccaccgtcactgttgaaaccgtggaaacaaacaatggt
gaggatgctgggaggcagtacatcaacgaaacctacgtaccaccagattacctgggtccc
actttttcaggaggggtactgggtaaaggcagggctggattcaccatatctccatctcgc
tcttctctccactctttctccccgcgtgccaccagaaacactgaaaatacagtcacagtg
tcgataatggatgtcacaaacattactggcctggacgacgtgatgaagaccaccaagatc
atcattggctgctttgtggccatcaccttcatggcagccgtgatgcttgtggtcttctac
aagctgaggaagcagcaccagctgcacaagcaccatggccccacccgcgctattgagatc
atcaacgtggaagacgagattggtgccggggccgggagcggcatctcagggggatcgacc
atgcaatctgggtgcggaggagacggaacattgaggatgcatcacccggaaatagtcaac
cttcccaacattgggcgatcagagcatcttaaccattactacaaggccaatcatttcaac
aacaatgtgatgggtctgagcattgggacaggggcaggagtcggtactctaagcaacaag
aacaatctatctccacttaaccagcaaggccaggatatcccaatctcctgtacacaggtt
ccaatcccctccgccactttccagaccatgtctggaaatggcaccaacaccaaccctctt
tctgtttccccacctctgccaatgtccctccccatgccccccatgggattacatggatcg
atcaagggtttcatgggccagaaccagaacccacaaatggaacctcttctgttcaaggga
aactcaaaggaaaacgttcaagagactcaaatttga
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