KEGG   Oncorhynchus nerka (sockeye salmon): 115144013
Entry
115144013         CDS       T07952                                 
Name
(RefSeq) MMS19 nucleotide excision repair protein homolog isoform X1
  KO
K15075  DNA repair/transcription protein MET18/MMS19
Organism
one  Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:one00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:one03036]
    115144013
   03400 DNA repair and recombination proteins [BR:one03400]
    115144013
Chromosome and associated proteins [BR:one03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    115144013
DNA repair and recombination proteins [BR:one03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     115144013
SSDB
Motif
Pfam: MMS19_C MMS19_N TOR1L1_N Sec7-like_HUS Adaptin_N
Other DBs
NCBI-GeneID: 115144013
NCBI-ProteinID: XP_029540456
LinkDB
Position
LG16:9540021..9555935
AA seq 1024 aa
MMAADSALLLGLVEEFVLGQQDRKAVDTATELKAGQFTILQLVEALGLHLTSSQPQTRGR
GVQLLSNVLQECYGDLTEREVEVLIVFYENRLKDHYVITPHVIQGLKALTKCSVLPPGSA
VSILKSLFQDIHVQSLMLAERSCVYNILIQLMESRESELKGLGADFVFGFVQSVDGERDP
RNLLLAFHIARKIVHEGYDLGKFTEELFEVTSCYFPIDFSPPANDPHGITQEELVLALRV
VLTGTPRFAEFLLPLIIEKLDSDVQSAKLDSLQTLTACASVYEHKDLAQFLPGLWASLRR
EVFQTASERVEAAGLAAVGTLTACLSRSVLNSDSEDSLNVFLELVLKDCQHHLCEPDLKL
VWPSAKLLQATSTASYRASHRVAAAVLPSLIEQYNSRTQCAQRRTLLEVLQGFVHPVTSS
EEDESVLLDFRQSLCSIVFSALSESNADLQITSMRVLTALGQQTGLLLESDVELAVDHLT
RLILEEGDPKVSLAVVECAGSLARLHPAAFISKMVPRLKEEIFSEHMAQGDSATPSQEHS
QQAVRQRCVAALAAVSSRPSLVQESTPVLLQVLTSAHTGTGAFSLEEVISVCHSLQKIAE
QAQDTEETGGVFHDVIPRLLGLALQAALQGSSGHCSPILEETVLSAMVPIISTTCARLQS
RLAGQTASRAVSLFLDGDVSFLPENAFPAQIQLLKAGDSRSQSQMVCLLVGCVCWLPRTV
EVPQMDRLLLELLELSCTCDHPLSYTSAAKCYAGLVNKSPAGEALDSLIDRTLKRISTEL
DSASSPVRTQAFTLLLWVSKALLLRYHPLSTALTDKLFSLLSDPELGWLAADGFSLLMSD
SPDVLNRGSHADVRIMYRQRFFTENSAKLVEGFNAAVQEKKSGYLKALSHIVNNLPRQVQ
LTELPALLPLLLEALSCPDQGVQVSTLSCLQPVLLDPPSALIAQLEVLVGRTLALTTSPT
MKVRIASLRCIHALSRFPEHKIMPFRARVLRALAAPLDDHKRVVRSEAAVARNEWFLLGS
PGGR
NT seq 3075 nt   +upstreamnt  +downstreamnt
atgatggctgcggatagtgccttgctattgggcttggtagaagaattcgtgttgggacaa
caggaccgcaaggcggtagacaccgcaacagaactcaaggctggacagtttactatactg
cagttggttgaagccttgggtttgcatctgaccagctcccaaccccagacccgaggccgt
ggtgtccagctcctctccaatgtcctacaggagtgttatggagaccttacagagagagaa
gtggaagtccttatagtgttttatgagaacagattgaaggaccactatgtcatcacacca
catgtcatacaggggctgaaagcgctgaccaaatgctcagtgttgccgcctgggtctgca
gtgtccattctgaaatcactattccaggacatccatgtgcagtccctgatgctggcggag
cggtcatgtgtttacaacatcctcatccagcttatggaatccagagagtcagagctgaag
ggcctgggtgcagactttgtcttcgggtttgtccagtcagtggatggggagagagaccca
cgcaaccttctgctggccttccatatcgctaggaagattgtccatgaaggctatgatctt
ggtaaattcacagaggagctgtttgaagtgacatcctgctatttccctatagacttcagc
cctcccgcgaacgacccccatggcatcacccaggaggagctggtcctggccctgagggtc
gtgctcaccggaacaccacgctttgcagagttcctgctgccactgatcattgagaagctg
gactccgatgttcagagtgccaagctggactccctgcagaccctgactgcctgtgcttct
gtgtatgaacataaagacctagcccaattcctaccaggcctttgggcctcgctgcgcaga
gaggtgtttcagacagctagtgagcgggtggaggccgctggcctggccgccgtcggtacc
ctgacagcctgtctctcccgctccgtactcaactcggactctgaagactccctcaatgtc
ttcctggagctggtcctcaaagactgtcagcaccacctgtgtgagccggacctgaagctg
gtgtggcccagtgcgaagctgctgcaggccacctctaccgcctcctacagggcgagccac
agagttgccgccgccgtcctgccgtccctcatagagcagtacaacagccgcacacagtgt
gctcagcggcgcaccctactggaggtgttacagggctttgtgcacccggtgacgtcatca
gaagaggatgagagtgtgctgttggacttcaggcagtctctgtgcagtatagtgttctct
gctctgtctgagagcaatgctgacctccagatcacatctatgcgtgtgctcactgcactg
ggccaacagacaggcctgctgttagagtcagatgtggaacttgccgttgaccacctcacc
aggctcatcctggaggagggagatcctaaagtcagcctggctgtggttgagtgtgcaggg
tctctggctcgcctgcaccctgcagccttcatctctaagatggttccacggctgaaggag
gagatcttctcagagcacatggcacaaggtgacagcgccacgccgtcccaggaacattcc
cagcaggcagtgcgtcagcgctgtgtggcggcgctggctgcggtgtcgtcccggcccagt
ttggttcaggagagcacacctgtcctgctacaggtcctcacctctgcacacactggcact
ggcgcgttctcattggaagaggtgatctctgtctgccacagtctgcagaagatagcagag
caggcccaggacactgaagagaccggtggcgtcttccatgacgtcattcctcgcctgctc
gggctggcattgcaggcagctttgcagggttcctcaggccattgtagcccgatactcgag
gagactgtcctatcagccatggtacccatcatcagcaccacctgtgcccgactacagtcc
cgactggctggccaaacagcctcgcgggccgtgtccctcttccttgacggtgatgtttcc
ttcctgccagagaacgccttccccgcccagatccagctcctcaaggcaggtgactcccgg
agccagtcccagatggtgtgcctgctcgtgggttgtgtgtgctggctgccacggaccgtg
gaggtgccccagatggacaggctactgttggagctgctggagctgagctgtacctgtgac
catccgctctcctacacgtcagctgccaagtgctacgctgggctggtcaacaagagtccc
gcaggcgaagccctggactctctgatagacaggacgttaaagaggatctccactgagctg
gactctgcgtcctccccagtcagaacgcaggcgttcactctgctgctctgggtgtccaag
gctctcctccttcgctaccaccctctgtccacagccctgaccgacaagctcttctccctg
ctcagtgacccagagctgggttggttagcggccgatggattctctctcctgatgagcgac
tcgccggacgtcctgaaccgcggtagccacgccgacgtgcgcatcatgtaccgccagcgc
ttcttcacggagaactctgccaaactggtcgagggcttcaacgccgcagtccaagagaag
aagtctggctacctgaaggcactgtctcacatagtgaacaatctgcccagacaggtccag
cttacagagctaccagcgctcctgccccttctgctggaggccctgtcgtgtccggaccag
ggggtgcaggtgtctaccctgtcctgcttgcaaccggtcctcctggaccccccttcagcc
ctcatcgcccagctggaggtgctggtgggccgcactctggcgctcaccaccagccctacc
atgaaagtgcggatagcctcactgcgctgtatccatgccctctcccgctttccagaacac
aagatcatgcccttccgtgcgagggtgctgcgcgccctggctgcccccctggacgaccac
aagagggtggtgaggagcgaggcggcggtggcccggaatgaatggttccttctggggagt
ccaggaggcaggtga

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