Oncorhynchus nerka (sockeye salmon): 115144191
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Entry
115144191 CDS
T07952
Symbol
gspt1
Name
(RefSeq) eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
115144191 (gspt1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115144191 (gspt1)
03012 Translation factors [BR:
one03012
]
115144191 (gspt1)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115144191 (gspt1)
Translation factors [BR:
one03012
]
Eukaryotic type
Release factors
115144191 (gspt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
PAM2
DUF5096
Motif
Other DBs
NCBI-GeneID:
115144191
NCBI-ProteinID:
XP_029540886
LinkDB
All DBs
Position
LG16:18300394..18311839
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AA seq
586 aa
AA seq
DB search
MDPRDTAPDSWEQEEDVKARAAAGLQSALAALSVNAKPFIPNVDAAVFVPTFLQSSPTEI
SNSDGHGVEPVASMEVLETVALVENGGGTGADMAVEVETWEQKEEPGEGEPGGGGALGGE
GGSSEEAQGREEVEMMEEEEEEELPVLKVIPLPPNAPKKEHVNVVFIGHVDAGKSTIGGQ
IMYLTGMVEKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH
FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVK
HLIILVNKMDDPTVNWSLERYEECKEKLVPFLKKVGFNPKKDIYFMPCSGLTGANLKDPI
EECTWYTGLPFIPHLDSLPSFNRITDGPVRLPIVDKYKDMGTVILGKLESGSIAKAQQLV
MMPNRHTVEVLSLLSDEVETDEAVPGENLKLRLKGIEEEEILPGFILCNAENLCHSGRTF
DAQIVIIEHKSIICPGYNAVLHIHTCIEEVQITALICLVDKKTGEKSKTRPRFVKQDQVC
IARLRCAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggacccgcgagacacagcaccggattcgtgggagcaggaggaggatgttaaggcccga
gctgccgcggggctccagtccgctctcgccgctctcagcgtcaatgccaagccatttatc
ccgaatgtcgacgcggcggtgtttgtgccgactttccttcaaagtagccctacggaaatc
tccaattccgatggtcacggtgttgagccagttgccagcatggaggttttagaaacagtt
gctctggtggagaacggaggagggacaggagcagacatggcggtggaggtggagacatgg
gagcagaaagaggagcccggggaaggagaaccaggaggaggaggagccctgggaggagag
ggaggttccagtgaagaggcacagggaagggaggaagtagagatgatggaggaggaagaa
gaggaggagttgcccgtgctaaaagtaatcccgctcccaccaaatgccccgaagaaggag
catgtcaatgtggtgttcatcggtcatgtggatgctggtaaatcaacaattgggggacag
atcatgtatttgacaggtatggtggagaaaagaaccctggagaaatatgaaagagaagca
aaagaaaaaaacagagaaacatggtacctgtcctgggccctggacactaaccaggaggag
agagacaaggggaagacggtggaggtggggagagcctactttgagacagagaaaaagcac
tttactatcctggatgcccccggccacaaaagctttgtccccaacatgattggtggtgca
tcacaggctgacttggcagtgctggtgatctcggccagaaaaggagagtttgagacaggc
tttgagaagggaggccagacgcgggagcacgccatgctagccaagacggctggagtcaag
cacctcatcatcctcgtcaacaagatggatgaccccaccgtcaactggagcttggaaagg
tatgaggaatgtaaagagaaattagtgccatttctgaagaaggtgggcttcaacccaaag
aaggacatctacttcatgccttgctctgggctaacgggagccaacttaaaggaccccata
gaggagtgcacgtggtacacggggttgccattcatcccacacctagacagcctgccaagc
ttcaacagaatcacagacggccccgtcagattacccatcgtagacaaatacaaggatatg
ggcacggtgatcctggggaagctggagtctggctccattgccaaagcccagcagctggtc
atgatgcctaacaggcacacagtggaggtgctgagcctgctgtctgatgaggtggagaca
gatgaagctgttcctggggagaacctgaagctaaggctgaagggcatcgaggaagaggag
attctgcctggcttcatcctctgtaacgctgagaacctctgccactccggacgcaccttt
gatgcccagatcgtcatcattgagcataaatccataatctgcccaggttacaacgcagtc
cttcacatccacacctgtattgaagaagtacaaatcacagccttaatttgtctagtggac
aagaagacaggtgagaagagcaagacacgacctcgctttgtcaaacaggaccaggtgtgc
atcgcccgacttcggtgtgccggaaccatctgcctggagaccttcaaagacttcccacag
atggggaggttcaccctacgagatgaaggcaaaaccattgctattggcaaagtgctgaag
ctggtaccagagaaggactaa
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