Oncorhynchus nerka (sockeye salmon): 115144235
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Entry
115144235 CDS
T07952
Symbol
usp42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
one01002
]
115144235 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115144235 (usp42)
Enzymes [BR:
one01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
115144235 (usp42)
Peptidases and inhibitors [BR:
one01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
115144235 (usp42)
Ubiquitin system [BR:
one04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
115144235 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
115144235
NCBI-ProteinID:
XP_029540968
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All DBs
Position
LG16:19782259..19811631
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AA seq
1215 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSGSLTFPGGDGNGMDGGCSNWGAGGPSSSDTPRVKTGGCV
GPTPGATVYSSSAAITADRPKEQVVLTSGDGIALPQKVLFPAERLSLKWNQVNRIGSGLQ
NLGNTCFLNSALQCLTYTAPLSNYMLSREHSKTCHEPGFCMMCTMQNHITQVFANSGNVI
KPIGVLNELKRIAKHFRFGSQEDAHEFLRYTVDAMQKSCLPGSKLDRQTQATSFIHQVFG
GYLRSRVKCLNCKAVSDTFDPYLDVALEIKTAPSITKALEQFVKPEQLDGENAYKCTKCK
KMVPASKRFTIHRSSNVLTISLKRFANYNGGKIAKDVRYPECLDLRPFMSQSHGEPQVYV
LYAVLVHSGFSCHAGHYYCYVKASNGQWHQMNDSSVSVSDIRSVLNQQAYVLFYIRSPDL
KNGGDYNHMSQPPGQSSPRPILTPRVNIGPRHTNTCFIGPQLPPHMAKNTFHNGNGSLRD
FPSGSKPSSGSSSMGKTSYGLLSSSSSSSHSLSCPTGIPDTAKRQKLSFFIGQGKQIRSS
SYAQPSSCSSSQTTSDMSAPRAPCINGTPSVNGNGHGASFLVPYGQESSEESDQEGGSGL
ENGTTKPHVNGRKGGPIPRVLALKPNGISNGQATMHHNGSGTNGSSKLSQIGHQNGHHKV
NGIKHPEKVNGHVLSPGLGPSISNGVESHHSGPSKEVYSAIPSQDSPSQSLHSADRDSHL
SPTPEKRTTTHSDPLPHHPPSTTANPPSSLADVGAKPPTDTMRESSSTSNPGALPLQPTP
HSLRTLVSPAFSQPLSGPGLGTTEGLGAPHSRSGENVRETENSPAAGLDGRLDGKPSSRE
GRDRMYSSDRDKGRDRLYSSDRDKDGDRLYSSDRDKDGERNGYHRDMSRERNWDRDSDRY
RHRRDHRDREHHRDREHHRSYRDRSASRDRHWESERRWERNAYHPRDRDRCHHHYHRPRE
NKERDRREHSLPHREEPHGRSRWRGERGDRKDRGDGKRGYYPSQEETPLPTPLSSNTKPS
QPPTSPDLSPARPALEKRPDPLREDSVEERRAKKHKKSKKKKSKDKARRRENGTSDVDSS
DRAADGSRSSKHKKKKKRRHDTDMEDEKSRSTQSSEGHRDPNAPRESRRASSSDEERASR
KRRYQDDDGSDNSYPEKHHRSDDDDNKDRFFSRNISPTATSHNASHHHLNGHTGNGFSRP
NGNSHGCSTNGLYNE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagagaaatctgaccacgagtcagtcgggtgcaagcgc
tccggatcgctgaccttccccggcggcgacgggaacgggatggacggcgggtgctccaac
tggggggcggggggtccctcatcctccgacacccccagggtgaagaccgggggctgcgtg
ggcccaacccctggagccactgtctacagcagcagtgctgccatcaccgcagacaggccc
aaggagcaagtggtgctgaccagtggggacggcatcgccttgccccagaaggtgctgttc
ccggccgagcggctcagcctgaagtggaaccaggtcaaccgcatcggatcaggtctccag
aacctgggcaatacctgcttcctcaactcggctctgcagtgtctcacctacactgctccc
ctcagtaactacatgctgtcccgggagcactctaaaacgtgtcatgagcctggattctgt
atgatgtgcaccatgcagaatcacatcacccaggtctttgccaactctgggaatgtcatc
aagcccatcggagtcctcaatgagctcaaacggattgcaaagcatttccgttttggtagc
caagaggacgcccatgagttcctgcggtacacagtggatgctatgcaaaagtcctgcctg
cccggaagcaaattggacaggcaaacacaggcaaccagtttcatccatcaagtctttgga
gggtatctaaggtccagagtaaaatgtttaaactgcaaagcagtctctgacacgtttgac
ccttatttggatgtcgctttggaaatcaagactgctcccagtatcaccaaagcactggag
cagtttgttaagcctgagcagctagatggagagaatgcctacaaatgcactaagtgtaag
aagatggttccagcctctaagagattcaccatccaccgcagctccaatgtgctcaccatc
tcactgaagcgcttcgccaactacaacgggggcaagatcgctaaggacgtgaggtatcct
gagtgcctggacctgcgtcccttcatgtctcagtcccacggggagccccaggtctatgtg
ctctatgctgtcctggtgcactctggcttcagctgccacgctggacactactactgctac
gtcaaggctagcaacggccagtggcaccagatgaatgactcctctgtatcagtcagtgac
atcagatcagtcctcaaccagcaggcgtacgtcctcttctatatcaggtcacctgatctg
aagaacggaggggactacaaccacatgagtcagccccctggacagtcgtccccccgcccc
atcctcacaccccgggtcaacattgggccacgacacaccaacacttgcttcataggacca
cagctgcccccacacatggccaagaacacctttcacaatgggaacggctccctaagggac
ttcccctctggctctaagcccagcagtgggagcagcagcatgggcaagactagctacggc
ctgctctcctcttcttcctcttcctctcattctctaagctgtcctacaggtatccctgac
actgccaagcgtcagaagctctccttcttcatcggtcagggcaaacagatccgctcctcc
tcttacgcccagccgtcctcctgttcttcgtcacagactacctcagacatgtccgcgccg
cgggctccttgcataaacggtacaccctccgttaacggaaacggtcatggagcctcattc
ctggtgccgtatggccaggagtcatcggaggagtctgaccaggagggaggcagcggtctg
gagaacggcacaaccaagcctcacgttaatgggaggaagggagggcccatccccagagtg
ctggccctcaagcccaacggcatcagtaacggccaggccaccatgcaccataacgggtct
gggacaaacggctcctccaaactcagccagatcggacatcagaatggacaccacaaagtt
aatggcatcaaacacccggagaaggtcaacggtcatgtactgtctcctgggttgggtccc
agcatttctaatggggtggagtctcaccacagtggcccaagcaaagaggtgtatagtgcc
atccccagccaggacagcccgtctcagagcctccacagtgccgacagagatagccacctc
tccccaaccccagagaaaaggacaacaactcactctgaccccctccctcaccacccacca
tcaaccactgctaacccgccatcctcattggccgatgttggcgctaagccacctactgac
accatgagggaatccagctccacctccaaccctggggccttacccctccagcccaccccc
cactccctcagaaccctagtctctccagccttctcccagcccctctctggaccaggcctg
gggaccacagaaggcctcggcgcaccacacagcagatctggggagaacgtcagggagact
gagaacagcccagcagcagggctggatggacggctggacggcaagcccagctccagagag
ggaagagaccggatgtattcttctgatcgggataaggggagagaccgactatattcttcg
gaccgcgataaggatggagaccggctgtactcttctgaccgggataaagacggagaaagg
aatgggtaccaccgtgacatgagccgtgaacgcaactgggaccgtgactcagaccgctat
cgacaccggcgggaccacagagatcgagaacaccaccgagaccgagaacaccaccggtcg
taccgtgatcgctcggccagccgggacagacactgggagtcagagcgtcgctgggagagg
aacgcctaccaccccagggacagggaccgctgccaccaccactaccacagacccagagag
aacaaggagagggacaggagggagcacagcctcccccacagagaggagcctcacggacgc
tccaggtggaggggggagaggggtgaccgtaaggacaggggtgatggtaagaggggttac
tacccttcacaggaggagacccccctgcccaccccactaagctccaacaccaaacccagt
cagccccccactagcccagacctctccccagccagaccagctctggagaaacgacccgat
cctctgagagaggacagcgttgaggagcgtcgggccaagaaacacaagaagagcaagaag
aagaagtccaaggacaaagctaggcgtcgagagaatgggacctctgatgtggattcctct
gacagggctgccgatggcagcaggtcctccaaacacaagaagaagaagaagaggaggcac
gacactgacatggaggacgagaagtcccgctctacccagagttccgaggggcaccgtgac
cccaacgccccccgggagagtcgcagggcgagcagcagtgacgaggagagggcgagcagg
aagcgacgttaccaggacgatgatggctctgacaatagctaccccgagaaacaccatcgc
tccgatgacgatgacaacaaagaccgcttcttctctcgcaatatatcgccgacagccacc
tctcacaacgcatcgcaccaccacctcaacgggcacacaggtaatggcttcagtcgaccc
aatggaaactcccacggatgttctaccaatggactgtacaatgaatga
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integrated database retrieval system
