Oncorhynchus nerka (sockeye salmon): 115144248
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Entry
115144248 CDS
T07952
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 1-like isoform X1
KO
K17908
autophagy-related protein 18
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04136
Autophagy - other
one04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
one00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
115144248
04136 Autophagy - other
115144248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115144248
03029 Mitochondrial biogenesis [BR:
one03029
]
115144248
Membrane trafficking [BR:
one04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
115144248
Mitochondrial biogenesis [BR:
one03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
115144248
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
WD40
WD40_MABP1-WDR62_2nd
WDR55
ANAPC4_WD40
BCAS3_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_HPS5
EIF3I
CPSF_A
Motif
Other DBs
NCBI-GeneID:
115144248
NCBI-ProteinID:
XP_029540999
LinkDB
All DBs
Position
LG16:complement(20290473..20298196)
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AA seq
445 aa
AA seq
DB search
MEDRETFDGPGGPQDLISSSFNQDTTSLSVGTKSGYRLFSVTSVDKMDCIHEGAESPDVY
IVERLFSSSLVVVVSLSMPRRMNVYHFKRGTEICNYSYSNNILSVRLNRQRMVVCLEESV
YIHNIKDMKLLKTLLNIPHNPSGLCALSVNHGNSYLAYPGSETIGEIMVYDANNLSTVTM
IPAHDSPLAALAFNVSGTKLASASERGTVIRVFTIPEGQRLFEFRRGMKRYVSISSLSFS
SDAQFLCASSNTETVHIFKLERHSPSREGGCPTWGAYVGKMFTAASTYLPSQVSDMMHQD
RAFATVRLNMFGLKNICALATVQKLPRLLVASSDGHIYIYNIDTQEGGECVLVRKHRLFE
GDKEPQEEQREEEELEDRRSLPPSNSLSYAATVALPSTPPSSTTLTGYLDGGAKKGDGIP
EHEFTKGPVCLDDKNEFPPVNNQSN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccgggagaccttcgacggtccaggagggcctcaagacttgatcagctcctcg
ttcaaccaggacaccacgtctctatcagtgggcactaagtcaggctacagactcttctct
gtcacctcggtggacaagatggactgcatccatgaaggagcggagtctccagacgtgtac
atcgtggagcggttgttctccagcagtctggtggtggtggtcagtctctccatgccccga
cgtatgaacgtctaccacttcaagagaggaacagagatctgcaactatagctactccaac
aacatcctctcagtcaggctcaacagacagaggatggtagtatgtctggaggagtcagtc
tacatccacaacatcaaagacatgaagctgctcaagacactgctcaacataccacacaac
ccctcaggtctctgtgccctctctgtgaaccatggtaactcctacctggcgtaccctggc
agtgagaccatcggggagatcatggtttatgacgccaacaacctgagcacggtgacgatg
atcccagcccatgacagtccccttgcagctctcgcattcaacgtgtcaggaaccaaactg
gccagcgcctccgagaggggtacagtgatccgagtgttcaccatcccagagggacaaaga
ctgtttgagttccgcagagggatgaagaggtacgtgagtatcagctcattgtcctttagt
tcagacgcccagttcctctgtgcctccagcaacaccgaaacggtccatatcttcaaactg
gaacgtcacagccccagtcgagaggggggatgtcctacgtggggtgcatacgtgggaaag
atgttcacagcagccagcacctaccttccctcccaggtctctgacatgatgcaccaggac
cgggccttcgccactgtacgacttaacatgttcggtctcaagaacatctgcgccttggcc
acggttcagaagctgcctcgtctgctggtggcgtcatcagatggacatatctacatctat
aacatcgacacacaggagggaggagagtgtgtgttggtcaggaaacatagactatttgaa
ggagataaggagccacaggaagaacaacgggaagaggaggagcttgaggatagaaggtcc
ctcccaccatcaaacagcttatcatacgctgccactgtggctctcccctcgaccccaccc
tcttctaccactctcacaggctacttagatggaggggctaagaaaggcgatgggatccct
gaacatgagtttaccaagggacccgtctgtctggatgacaagaacgagtttcctccagtc
aacaaccagagcaactga
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