Oncorhynchus nerka (sockeye salmon): 115144375 Help Entry 115144375         CDS       T07952                                  Symbol msh6 Name (RefSeq) DNA mismatch repair protein Msh6   KO K08737   DNA mismatch repair protein MSH6 Organism one  Oncorhynchus nerka (sockeye salmon) Pathway one03430   Mismatch repair Brite KEGG Orthology (KO) [BR:one00001]  09120 Genetic Information Processing   09124 Replication and repair    03430 Mismatch repair     115144375 (msh6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:one03400]     115144375 (msh6) DNA repair and recombination proteins [BR:one03400]  Eukaryotic type   SSBR (single strand breaks repair)    MMR (mismatch excision repair)     Mismatch and loop recognition factors      115144375 (msh6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II Motif Other DBs NCBI-GeneID:  115144375 NCBI-ProteinID:  XP_029541211 LinkDB All DBs Position LG16:26582914..26619716 Genome browser AA seq 1383 aa AA seqDB search MAKQSSIFNFFNKSPPPVLKAKPSPSPAEADLPSSVRKKNSSPKEEAKHASQTPTTKKTP AKPRNANASKGGFGKLFGNKTLTIKESPAPCPFSAGALVWAKLEGHPWWPCMVVPQPVGG EQMRGRGKSQRLHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIRKAME LADAAMPDSPETRLKMPVCMDPSDAEEDEEEDMELDKSTLTDEDLTEEEDEETVKSKPSR RSSRATAEQGSKSKRRRIVVASDSEGSGDEFKPEQAGCSSEEEVVNSMSEEDVESESEAE PDSPVKQVKRKRPVEKPSSAKPKPKTPTLPETTKRAPLSSTITADTKSRLSAFSAPESFD SQANGSGAGGQGGATVWDHEKLDWLQEGRRKDSKRRRQSEEDYDPTTLYVPEDFLNKTTP GMRRWWQLKSETFDAVLFFKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEIGFGR FSDGLVQRGYKVARVEQTETPDMMEARCKTMLKPTKFDRVVQREVCRIITRGTQTYSVLD GAPSETHSKYLLSIKEKAEEESSGRCRTYGVSFVDTSVGYFYVGQFQDDRHCSRLRTLLS HYTPAQVLFEKGNPSAETRKIFKASLSSAMQEGLTAGSQFWDAQKTLKTLAEEDYFKESV RKGEESESSVLPSVLKSMTSESDSLGLTPKEGYELALSALGGCMFYLKKCLVDQELLSMT NFQEYIPVDVEMEKAAGPTSFFSQTRQRMVLDGVTLANLEILQNVSGGTEGTLLERLDTC STPFGKRLLKQWLCSPLCNPTSIGERLDALEDLMGVQAQATEVSDLLKKLPDLERLLSKI HSIGTPKGQDHPDSRAVLYEEVTYSKKKIADFLSALEGFKTMQEIVTILGPVAVDFRSRL LRQVVNLKDDGQEGLFPDLSAELKRWDTAFDHQKARATGVITPKTGFDPEFDQALSGIKA CERDLQDYLDRQKKRLGCRNLTYWGTGRNRFQMEVPDSVSERNIPEEYKVKSTKKGWKRY WTREIERLFSELQSLEEKRDAALKDCMRRLFYNFDKNYRDWQTGVVCMAVLDVLLSLTRY SQGGDGGPMARPQVLLPGDISQSAAFLDLRGSRHPCVTKTFFGDDFIPNDIAIGCPGGEE EGQEDKGHAPCVLVTGPNMGGKSTLMRQCGLVVVLAQLGCYVPAESLSFTPVDRVFTRLG ASDRIMAGESTFFVELSETASILHHGTKHSLVLLDELGRGTATYDGTAIASAVVNELAKR ICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENEGDEDPSQETITFLYKFIAGACPKS YGFNAARLANLPEDVIQSGHRKAKEFERSTISLRVFKKLCLYAEDPTAASTQFALLLRMI SNL NT seq 4152 nt NT seq  +upstreamnt  +downstreamnt atggcgaagcaaagcagcattttcaattttttcaataagtctccgccaccggttctgaag gcgaaaccgagtccctcgcctgcagaagccgacttgccatcctcagttcgaaaaaagaac agctctccaaaagaagaagctaagcatgcatctcaaactcccaccaccaaaaagactcct gcaaaaccccgtaatgcaaatgcgagcaaaggcggattcggcaaactctttgggaataag acactaacaataaaggagagtccagcaccatgtccattcagtgccggagccttggtgtgg gccaagctagaggggcacccctggtggccgtgtatggtagttccccagcctgtcggcgga gagcagatgaggggtaggggtaaaagccagcgcctgcatgtccacttcttcgatgagcca ccaaccaggggctgggtcagcaccaaatatatccgcgagtatcaaggctcggacagcagt gatgctaagacaggaggggtgttcttcagtggtaagcctgtgatccgcaaggccatggag ctggctgatgctgctatgccagacagcccagagactagactgaagatgcctgtctgtatg gacccatctgatgctgaggaagatgaggaggaggatatggagcttgataagtcaacattg accgacgaagatttgactgaagaggaagatgaggagacagtgaagtctaagcctagtcgc cgttcctcccgtgccacagcagaacagggcagcaagtccaagcgtcgccgcatcgtggtt gcctccgacagtgaaggctcgggtgacgaattcaaaccagaacaggccggatgcagcagt gaggaagaggtagtgaacagtatgtcggaggaagatgtagaaagtgaaagtgaggctgaa cccgacagcccagttaaacaggtgaaacgcaaacgacccgtagagaagccatccagtgcc aaaccaaaacccaagactcccactcttccagaaaccaccaagagagcccccttatctagc accatcacagccgacaccaagtctcgactctcagccttttcggccccggagagcttcgac agccaggcgaatggctcaggtgccggcgggcaaggtggggctacggtatgggaccatgag aagcttgattggctacaggaaggccggaggaaagactccaagagacgaagacagtctgag gaagactacgatcccacgactctgtatgtcccagaagacttcttgaacaaaacgacccca ggcatgcggcgctggtggcagctcaagtcggagacgttcgatgccgtgctcttcttcaag gtgggtaagttctatgagctgtaccacatggatgctgtgattggtgtcaacgagctgggt ctgaccttcatgaagggggcctgggcccactctggcttccccgagataggctttggacgc ttctcagatggactggtgcagaggggatacaaggtggcacgtgtggagcagacggagact ccagacatgatggaggctcgctgtaagaccatgctgaagcccaccaagtttgaccgggtg gtacagcgtgaggtatgccgaatcatcacacggggaacacagacctacagcgtgttggac ggagccccttctgagacacacagcaaatacctcctcagcatcaaggagaaggcagaggag gagagttcagggcgctgcaggacctatggggtcagcttcgtggacacatctgtagggtac ttctatgtgggccaattccaggacgaccgacactgctcccggctccgcaccctgttgtct cactacacccctgcacaggtgctctttgagaaggggaacccttcagccgaaacccgtaaa atcttcaaggcttctttgtcctcggctatgcaggaggggctgactgcaggctcccagttc tgggatgcacagaagaccctgaagaccctagctgaagaagactactttaaagagagtgtg aggaagggtgaggagtctgagagcagtgttctcccctctgtcctcaaatccatgacgtct gagagcgactcgttgggtctgacccctaaggaggggtatgagttggctctgtcggccctg ggaggctgtatgttctacttaaaaaaatgtctggttgaccaggagctgctgtccatgacc aacttccaggaatatatcccagtggatgtggagatggagaaggcagccgggccgaccagt ttcttctcccagacccgtcagcgtatggtcctggatggggtgacactagccaacctggag atcctgcagaatgtgtcggggggtacagaggggaccttgttggaacgcctggatacctgt agtactccatttggtaaaaggttgctgaagcagtggctctgttccccgctctgtaacccc acatccataggggaacgcctggatgccctggaggacctgatgggagtgcaggcccaggct acggaggtctcagacctgctcaaaaagctccctgatctggagaggctccttagtaagatc cacagcatcggtactccgaagggtcaggaccacccggacagcagggctgttctgtatgaa gaggtcacctacagtaagaaaaagattgcggacttcctctcggctctggagggcttcaag accatgcaggagattgtgaccatactaggaccggtcgcggtcgacttccggtccaggctg ctgcgccaggtggtcaacctgaaggatgacggtcaggagggcctcttccctgacctgtcg gctgagctgaaacgctgggacacagccttcgaccaccagaaggcccgcgccaccggagtc atcacccctaagactggctttgacccagagtttgaccaggctctcagcggcatcaaggcc tgtgagagggacctacaggactacctggacaggcagaagaagaggctgggctgcaggaac ctgacctactgggggacgggacggaaccgctttcagatggaagtaccagacagtgtctcg gagaggaacattcctgaggagtacaaggtgaagtctactaagaagggctggaaacgctac tggaccagggagatagagcgtctgttctcagagctccagagtcttgaggagaagagagac gcagctctgaaggactgcatgagaagactcttctacaactttgacaagaactatagggac tggcagactggggtggtgtgcatggctgtgctagatgtgttactgagtctgacacggtac agccaggggggtgatggaggaccaatggcacggcctcaagtactacttcctggtgacatc agccaatcagcagccttcctggacttgaggggctcccgccacccctgtgtcaccaaaacc ttcttcggtgatgacttcatccctaatgacattgctattgggtgccctggcggcgaggag gagggccaggaggataaaggacatgcaccctgcgtgctggtcactgggcctaacatggga ggaaagtcgactctaatgagacagtgtggtctggtggtggtcttggcccagttgggttgc tatgttcctgctgagagcctgtcctttacccctgtggacagagtcttcacccggttggga gcatcggaccgtatcatggctggggagagcaccttctttgtagagctcagtgagactgca agtatcctccaccatgggaccaagcactccctggtgctgctggatgaactgggaaggggc acagccacatatgacggcacagcgatagccagtgctgtggtgaacgagctggcgaaaagg atctgctgtcggaccctcttctccacacattaccactccttagtagaagactacaccaac aaccctgctgtacggctcggacacatggcctgtatggtggagaatgagggagatgaggac cctagtcaggagaccatcaccttcctctacaagtttatcgcgggagcttgtcctaaaagc tacggtttcaacgctgctcgcctcgccaacctgcctgaggatgttatacaatcaggccac aggaaggccaaggagtttgagaggagcaccatttccctacgagtcttcaagaagctgtgt ttgtatgctgaagaccccacagcagccagcacacagtttgccttgctcctccggatgatc agcaacctgtga

DBGET integrated database retrieval system