Oncorhynchus nerka (sockeye salmon): 115144383
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Entry
115144383 CDS
T07952
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115144383 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115144383 (smarcd1)
03036 Chromosome and associated proteins [BR:
one03036
]
115144383 (smarcd1)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115144383 (smarcd1)
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115144383 (smarcd1)
PBAF complex
115144383 (smarcd1)
GBAF(ncBAF) complex
115144383 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
115144383
NCBI-ProteinID:
XP_029541226
EnsemblRapid:
ENSONEG00000019114
LinkDB
All DBs
Position
LG2:complement(60099461..60126513)
Genome browser
AA seq
512 aa
AA seq
DB search
MAARGSFQSAPTGGGGGGGMGPGPQVQGGGPGMGPGTAGGRMGPSSGAQNHLYRSPMPGP
GYPRPGGMPPSSRMTPQGPPMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQVQQQRNQHT
KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR
IFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIE
LDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRLAR
MLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHA
LLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNK
IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVANPEEERRAEFYF
QPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggtagttttcaatcggctccaacgggaggaggtggtggcgggggaatg
ggacctggaccccaggtgcaaggtggaggaccaggcatgggacctggaactgctggtgga
aggatgggaccctcatcgggcgcacagaaccacctttaccgatctccgatgcctgggcct
ggatacccgagaccaggtgggatgccaccctccagccgtatgacaccccagggtccgccc
atggggcctccaggctacggctccagccccgtgtcccgaccagggatgcctggcgtcatg
gatccctcccgtaagaggcctgcccctcagcaggtccagcaacagcgcaaccaacatacc
aagaagaagaaaatggcggataagattttacctcagaggatccgggagctggtgccagag
tctcaggcctacatggacttgctggcgtttgagaggaagctggatcagaccatcatgagg
aaacgtctggacatccaggaggcactcaagagacccattaagcaaaagcgaaagcttcgt
atcttcatatccaacaccttcaaccctgccaagcccgacgcagaagacggagagggcact
gttgcatcatgggagctgcgtgtcgaagggcgtctgcttgaagatactgctgtgtccaag
tatgaagccaccaagcagaagagaaagttctcttccttcttcaagtctctggtcatcgag
ttggacaaggacctctatgggcctgacaatcacttggtcgagtggcacaggactgcgacc
actcaggagacagacgggttccaggtgaagaggccaggggatgtgggcgtacgctgcact
gtcctgctcatgctggactaccagccccctcagttcaagctggaccctcgcctggcccgt
atgttggggatccacacccagaccaggccggtcatcatccaggcactctggcagtatgtt
aagacccacaagctgcaggacccccacgagagagagttcatcaactgtgacaagtacctg
cagcagatctttgagactcagcgtatgaagttctctgagatcccacaacgcctccatgct
ctcctgatgcctccagaacctatcatcattaaccatgtcatcagtgtggatcccaatgac
cagaagaagacagcctgctatgacatcgatgtggaggtggacgacactttaaagacccag
atgaactccttcctcctatccaccgccagccagcaggagatagctggcctggacaacaag
atccatgagaccatagagacgatcaaccagctgaagacccagagagagttcatgttgagc
ttcgccagagacccccagggcttcatcaacgactggctgcaatcacagtgcagggatctc
aagactatgactgatgtggttgcgaacccagaagaggagaggagagcagagttctatttc
caaccctgggcccaggaggccgtgtgtcgttacttctactccaaggtccagcagaggagg
caggagctggaacaagccctgggaatcagaaacacttag
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integrated database retrieval system
