Oncorhynchus nerka (sockeye salmon): 115144387
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Entry
115144387 CDS
T07952
Symbol
thbs2
Name
(RefSeq) thrombospondin-2 isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04145
Phagosome
one04510
Focal adhesion
one04512
ECM-receptor interaction
one04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115144387 (thbs2)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
115144387 (thbs2)
09144 Cellular community - eukaryotes
04510 Focal adhesion
115144387 (thbs2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115144387 (thbs2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
one04131
]
115144387 (thbs2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
one04147
]
115144387 (thbs2)
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115144387 (thbs2)
Membrane trafficking [BR:
one04131
]
Endocytosis
Phagocytosis
Opsonins
115144387 (thbs2)
Exosome [BR:
one04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115144387 (thbs2)
Exosomal proteins of colorectal cancer cells
115144387 (thbs2)
Exosomal proteins of bladder cancer cells
115144387 (thbs2)
Glycosaminoglycan binding proteins [BR:
one00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115144387 (thbs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_CCN
TSP1_ADAMTS
Laminin_G_3
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
115144387
NCBI-ProteinID:
XP_029541251
LinkDB
All DBs
Position
LG16:28599549..28632981
Genome browser
AA seq
1207 aa
AA seq
DB search
MVTAALTGGFALSPGDMILRRSLNLLPILLLCSSALPQDGEVTMDDDTTFDLFDISGITR
KTLGAKQFRGQDTDNPAYRFIRFDHLPSVSAPVLKQMLLQIQNNEGFVFVASMRQDRGSR
GTLIALEGANGQRQFEIVSNGRANTLDLVYWVDGSQNVVSFEDVDLSDSQWKNITIHVHG
ENANLFVGCSLIDSFILDEPFYEHLQAEDSRMFVAKGSIRENHFRGLLQNVRFMFDTSVD
DVLRNKGCEVTKADEANVVVSESTDMEDVSTSTAITTNFIGQKTEKLGADMCERSCEELS
TMFQELKGLRVVVGNLIDGLQKVTEENTLMKDALGKMKNSKEKHMCWQDGRLFEDKEDWV
VDSCTTCTCQDSKIVCHQITCPPVACASPSFIDGECCPVCLSKDSEDGWSPWSEWTECTV
TCGTGTQQRGRSCDATSNTCSGPSIQTRKCSLGKCDSRVRQNGGWSLWSPWSSCSVTCGE
GQITRIRHCNAPTPQLGGKDCEGQGRDTQRCEAKPCPIDGGWGPWSPWAICSATCGGGVK
GRTRVCNSPEPQYGGKKCPGETNDSDACNKQECPIDGCLSNPCFGGVDCNSAPDGSWECG
PCPLGFRGNGTHCEDVNECDMVSDICFKAGGASRCINTDPGFHCLSCPPRYKGTQPFGMG
VEAAKKNKQVCEPENPCKDKTHNCHRSSECIYISHFSEPMYKCECRIGYAGDGFICGEDS
DLDGWPNQNLVCGANATYHCKKDNCPNLPNSGQEDFDKDGQGDACDQDDDNDGIVDERDN
CPLMYNPRQFDFDKDDVGDRCDNCPYEHNPAQIDTDHNGEGDACAIDIDGDEILNEQDNC
PYLYNNDQKDTDMDGVGDQCDNCPLLHNPDQADTDNDLVGDQCDNNQDIDEDGHQNNLDN
CPYVANSNQADHDKDGKGDACDFDDDNDGIPDDRDNCRLTPNKDQLDSDGDGRGDACKDD
FDNDNIPDFLDVCPENNAVSVTNFRKFQMVHLDPKGTAQIDPNWVVRHQGKELVQTVNSD
PGIAVGFDEFNAVDFSGTFYVNTDRDDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPS
KAFGISGVSLKVVNSTTGTGENLRNALWHTGNTKNQVRTLWHDPKNIGWKDYTAYRWHLI
HRPKTGFIRVVVYEGKQILADSGPVYDKTFAGGRLGLFVFSQELVFFSDLKYECRDKLEF
PTVLSIR
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggtaactgccgctctaacagggggatttgcactttcaccaggagatatgatactcagg
agaagtctcaacttgctgcctattttattactttgctcctcagcgctacctcaagatggt
gaggtcacaatggatgacgacacaacgtttgacctgtttgatattagcggtatcacacgc
aagactctgggcgccaagcaattccgtggccaagacacggacaaccccgcttaccgcttc
atccgcttcgaccatttgccctcagtgagcgcgcccgtgctcaaacagatgcttctgcaa
atccagaacaacgagggcttcgtgttcgtggccagcatgcgccaggaccgtggctcgcgg
ggaaccctcatcgcattggaaggcgccaacggccaacggcagtttgaaatcgtctccaac
ggtcgtgccaacacgctggaccttgtctactgggtggacggctctcaaaatgttgtctcc
ttcgaggatgttgacctgtctgactcgcagtggaagaatatcacaattcatgttcatggc
gaaaatgcaaatctgtttgtgggctgcagtctcatcgacagcttcatcttggatgagcct
ttctacgagcacctgcaggcagaggatagccgaatgttcgtcgccaagggatccatccgc
gaaaaccatttcaggggcttactgcagaatgttcgcttcatgttcgacacatccgtggat
gatgttctgaggaacaaaggctgtgaagtcactaaggctgacgaggccaacgtggtggtg
agtgagagcacagatatggaggatgtgagtacctccacagccatcaccactaacttcatc
ggccaaaagacagagaagctgggagcagatatgtgtgaacgatcctgtgaggaactcagc
accatgttccaggagctcaaaggactgcgggttgtagtggggaacctcatagacggcctg
cagaaagtgacagaggagaacacattaatgaaggatgctttggggaagatgaagaactcc
aaggagaaacacatgtgttggcaggacggacggctgtttgaagataaggaggactgggtg
gtggacagctgcaccacgtgtacctgtcaggactcaaagatcgtgtgtcaccaaatcact
tgtcctcctgtggcctgtgctagcccctccttcatcgacggagagtgttgccctgtgtgt
ctgtctaaggacagtgaggacggctggtccccctggtcggagtggacagagtgtactgtc
acctgtgggacaggtactcaacagaggggacgctcatgtgatgccaccagtaacacctgc
tccggaccatccatccagaccaggaaatgcagcctgggaaaatgtgacagccgagttcgt
cagaacggtgggtggagcctgtggtctccctggtcatcatgctcagtgacgtgtggcgag
ggccagatcaccaggatacgccactgcaacgcacccacaccacaactggggggcaaggac
tgtgagggccaggggagagatacacagcgctgtgaggccaagccctgtcccattgacggt
ggttggggaccgtggtcgccatgggcgatctgctcggcaacctgtgggggtggagttaag
ggtcggacccgtgtctgtaacagccccgaaccccagtacggaggcaagaagtgccctggg
gagaccaacgacagtgatgcctgcaacaaacaagaatgccctatcgacggttgtctgtct
aacccatgcttcggaggagtggactgtaacagtgcccccgacggatcctgggagtgtggg
ccatgccctctcggtttccgcggcaacggaacccactgcgaagacgtcaacgagtgtgac
atggtgtctgacatatgctttaaagctggtggagcatcgcgttgcatcaacacagaccca
gggttccactgtctgtcctgcccaccccgctacaagggaacgcagcccttcggcatgggg
gtggaagctgccaagaagaacaaacaggtctgcgagccagagaacccctgcaaagacaag
acccacaactgtcaccggtcctcagagtgtatctacatcagccactttagtgaacccatg
tacaagtgtgagtgcaggatcggctacgctggtgatggcttcatctgtggagaggactca
gacctggatggatggcctaatcagaacttggtgtgtggggccaacgccacctatcactgc
aaaaaggataactgccccaacctgcctaactctggacaggaagattttgacaaagatggt
cagggagacgcttgtgaccaggatgatgacaacgatggaatcgtggatgaaagagacaac
tgtcctctaatgtacaatcccagacagtttgactttgataaggatgatgtgggggatcgt
tgtgacaactgcccctatgaacacaaccctgcccagatcgacaccgaccacaatggggaa
ggtgacgcctgtgctatcgacattgatggagatgaaatcctaaacgagcaagacaactgc
ccgtacttgtacaacaatgaccagaaggacactgacatggatggagtcggtgaccagtgt
gacaactgtcctctgctacacaaccctgaccaggctgacacagacaatgaccttgtagga
gaccagtgtgacaacaaccaggatatcgatgaagacggtcaccagaataacctggacaac
tgtccttacgtcgccaactccaaccaggccgaccacgataaggacggcaagggggatgcc
tgtgacttcgacgatgacaatgacggtatccctgatgatagggacaactgtagattgaca
cccaataaagatcaactggactctgatggcgacggtagaggagacgcctgcaaagacgac
tttgacaacgacaacatcccggacttccttgacgtgtgtcctgagaataatgccgtcagc
gtcacaaacttccggaagtttcagatggtgcacctggaccccaagggaacagcgcagatc
gaccccaactgggtggttagacatcagggcaaggagctggtacagaccgtcaactctgac
cctggcatcgctgttggttttgatgagttcaacgcggtggacttcagtggtacgttctac
gtgaacacggaccgggatgacgactatgctggctttgtgttcggttaccagtcgagcggc
cgcttctacgtggtgatgtggaagcagatcactcagacctactgggaagacaaaccctcc
aaggcctttggtatctctggtgtctctctcaaggtggtcaactcaactacgggcacaggg
gagaacctgagaaatgccctgtggcacacaggcaacacaaaaaatcaggtgcgcactctg
tggcacgacccaaagaacattggctggaaggattacacagcctacaggtggcacctcatc
cacagacccaagactggattcattagggttgtggtctatgaagggaaacagatcttggca
gactcgggaccagtgtacgacaagacgtttgctggaggacggttaggcctgtttgtcttc
tcccaggaactggtcttcttctctgatctcaaatatgagtgtagagataagctggagttt
ccaactgtgttgtccatcagataa
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integrated database retrieval system
