Oncorhynchus nerka (sockeye salmon): 115144423
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Entry
115144423 CDS
T07952
Name
(RefSeq) interphotoreceptor matrix proteoglycan 2-like
KO
K19017
interphotoreceptor matrix proteoglycan 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
one00536
]
115144423
Glycosaminoglycan binding proteins [BR:
one00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
115144423
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SEA
EGF
Motif
Other DBs
NCBI-GeneID:
115144423
NCBI-ProteinID:
XP_029541328
LinkDB
All DBs
Position
LG2:complement(894061..912706)
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AA seq
1457 aa
AA seq
DB search
MEIPSEGSDGDVQELPVETTSEATVNVAPEDTEEETPEILEEVISVATTHLILEATEEIT
PEAVLEDTVATTTNEVVIEIGPEEEVTPETLVKAIPEDVTGITEEATIKAEVEMKEVTME
VTSEATLEVTPEVEEITEETAVEDNPEVEIEVTPESTEEVPEEAEEVPLETAVEEIPPET
VEITLEAAEEDSTETVEEIVSVTPEEITPEHSEEEIPETSEEEIPEPSEEETPEASEEVP
SEAVEDIIPEATEEASKKTITETTEEASEEIILERSEAGAEITTEAAGESTPEATQEAAV
EITHEVTTETGILTDTEENNNGDRYRDAEENNNGDRYRVTEETNDDFLGIQDIITEVENT
LGNEIEDIMTRPSTPMKEQVVELRIQLKGENYNDALRDPSSFYYQRVAKHFTHKIEDAFE
RLPGFKKVFVVEFRPQKDLQRGILSVVVHYAVTLEVDGAGISNETMDYINLQSNVVEKSY
RDAVERPTVVYTITDFRNYITEALHKENFMSNTTLDVDPDSLQLERVDNLFLGGRPTTKP
EESNDMMDNVLAAEKPPDAPGQDLDVSDIFLKKDDFLFPVDPLKGSGSVVASENDVFVLD
ETTLPPSTTAVPAENNGNIEEEGFLLSNTQQDSDTPDGDGVVGAGGSSTSSPSQPQTTEA
PVPAPPRVDPDLDAGSGSGFSGDDQGADVFPWFPVTTEETDYIEEDEEDSMVGEVHFPDP
EVEPKEEEKKDEEKGEEITKSVLTETPEEMGPFESHPESAPVEEEPQQPFLDRLPVTQDI
STRPDYTTTAEVPVFWTAETLTVELSIQTLESSGIYDDYYPSEPFTIIAPVTDYPYPQFY
TTEALVLEGPAAETHGSVEELSEPTSPIEVELPTVTESPTFIDMELFTVKESIFDMITSE
PPEIEAFTDRPLLLVPDPEDEDGEVEILEEQGAEAAGPLATLLPALDISEEDLAEDQIFV
VAAGTAAPEVIESHNILSPEKESPFSRISDSVPEEEEATHHPATTEIAPHGDIEISKTPE
IAPTILPPFFQPTFRHTENLLEAAEESDVSIEEGDVSMALATPSPAHDTYELEVGTSIQA
VGDYAPDSPMSEIDLTFNVYDGTSHMDGDSSGYSSIAHGSDVGSIVMAKSPGKDLMVFFS
LRVTNMMFSEDLFNKSSTEYKALEQRFLELLIPYLQSNLSNFQNLEILNFRNGSIVVNSR
MKFGKPVSRGVTNTVYLILEDFANSAFQTMNLAIDKYSLDVESGNQANPCKFQACNEYSM
CTVNRWSGEAECVCDAGYFSVDGLPCQSICDLQEDFCLNDGKCDVIPGKGAICRCRVGEN
WWYRGEHCEEYVSEPLVVGIAIASVAGFLLVASGAIFFLARTLRDGYDKEDSEDPLRDQD
SVPSLERATKFNPMYESDVATAEYYRRYEDDVPHHSTGSADPSVEFCSDEILQIYDNSEL
TREVRRGTRVYEILFSP
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggagatcccttcagagggttcagatggagatgttcaggagctccctgtggagaccacc
tcagaggctacagtaaatgttgccccagaagacactgaagaggagacccctgagatttta
gaggaagttatctcagttgccacaactcatttgatactcgaggctacggaggagatcact
ccagaggctgtactagaggatactgtagccactactactaatgaagtggtaatagaaatt
ggtcctgaggaagaagtcactccagaaactttagtaaaggccattccagaggatgtaaca
gggatcactgaagaagcaacaataaaggctgaagtagagatgaaggaagttacgatggag
gtcacctcagaagccactttggaggtcactcctgaggttgaggagattacagaagaaact
gcagtagaggacaatcccgaggtggagatagaggtaactccagagtctactgaagaagtt
cccgaggaagcagaagaggtccctttggagactgcagtggaagaaatccccccagagact
gtagagataactctggaagctgctgaagaagactcaacagaaactgtagaagaaatagtt
tcagtgactccagaagagataacaccagaacattcagaggaggaaattccagaaacttca
gaggaggaaattccagaaccttcagaggaggaaactccagaggcttcagaagaggtccca
tctgaggcagtagaagatatcattccagaagctacagaagaggcttccaaaaagacaatt
actgaaactacagaagaggcttccgaagagatcattctagagcgttcagaagctggagca
gagataaccacagaggctgcaggtgagtccactccagaggcgacacaggaggctgctgtg
gagattactcatgaggttaccactgaaactggaattttgacagacacagaggagaacaat
aatggcgatcgttatagggatgcagaggagaacaataacggtgatcgttatagggtcaca
gaagaaacaaatgatgacttcctagggatccaagatatcataacagaggtggaaaacacg
ctgggcaatgagatcgaggacatcatgacgaggccgtccacacccatgaaggagcaggtg
gtagaactcagaatccagctaaagggagagaactacaacgacgccctgagagacccctct
agcttctactaccaacgcgtggccaaacatttcacccataaaattgaagatgcatttgaa
aggttaccaggattcaagaaggtctttgtagttgaattcaggcctcagaaggacctccaa
aggggtatcttgtctgtggtagtccactacgcagtgactctggaagtggacggggcaggc
atcagtaacgagaccatggactacatcaacctccagtccaacgtggtggagaagtcttac
cgtgacgccgttgaacgccccactgtggtctacaccataacagacttccgaaactacatc
actgaagccctgcacaaggagaacttcatgagcaacaccactctggatgtagaccctgac
tcactgcagctagagcgagttgataacttgtttctgggagggagacccaccactaaacca
gaagagtccaatgacatgatggacaatgttctggctgctgagaaaccaccagatgctcct
ggccaagacttggatgtcagcgacatcttcctgaagaaggatgatttcctgtttcctgtg
gaccctttgaaaggctccgggagcgttgtggccagtgaaaatgatgtgttcgttctggat
gaaaccaccttgccacccagcaccactgctgtccctgcagagaataatggaaatattgaa
gaagagggatttcttctcagcaacactcagcaagactctgatactcccgatggggatggt
gtggtcggtgctggaggctcctctacctcctccccttcacaaccacagaccacagaggcc
ccggtcccggcacctcccagagtagacccagatttggatgctggctctggctccggcttc
tctggggatgaccaaggggctgacgtcttcccatggtttcccgtgacaactgaggagaca
gactacatagaggaggatgaggaggattctatggtgggggaggtgcattttccagatcca
gaagtggaaccaaaggaggaagagaagaaggatgaggagaagggggaagagatcaccaaa
tctgtcctgactgaaactccagaggaaatgggtccttttgagtcccatccagaatctgcc
ccagttgaggaagagccacaacagcctttcttggacaggctgcctgtgacccaagacatt
agtacccgacctgactacacgaccaccgctgaagtacctgtgttctggaccgcagagacc
ctgaccgtggagctctccatacaaacgctggagtcctctgggatttatgacgattattac
ccaagcgaaccattcaccatcatagcaccagtcactgattatccctatcctcagttttac
accactgaggccctggtgttggaagggccagcagctgagacccatggttctgttgaggag
ctgtcggagccaactagtccaatagaggttgaactccccacagttactgagtcacctacc
ttcatagacatggagctgttcacagtcaaggagtccatcttcgatatgatcacctccgaa
ccaccagagatcgaagccttcaccgacagacctttactcttggtgcccgatcctgaggat
gaagatggagaggtggagatcttggaggaacagggggcggaggccgcagggcccttggcc
acactactcccagcccttgacatctcagaggaggacctagctgaagatcaaatctttgtt
gtggctgcaggtacagcagccccggaagtcatagagtctcataacatcttatcccccgag
aaggaatctcccttctctcgtatatctgactctgtaccagaagaggaggaagccacacac
catccagccaccacagaaatagcaccacatggtgacattgaaatctctaagacacctgaa
attgccccaacaatcctacctccattcttccagcccacattcagacacacagaaaacctg
cttgaggcagcagaagagtcagatgttagcattgaagaaggagatgttagcatggcgcta
gcaaccccttccccagctcacgacacatacgaactagaagtcggcacttcaatccaagcg
gttggagactacgcaccagactcccccatgtcggaaattgacctcaccttcaacgtgtat
gacggaacgagtcacatggacggggacagcagcgggtactccagcatcgcccacggatca
gacgtgggcagcatcgtcatggcgaagagccctggcaaggatctgatggtgttcttcagt
ttgagggtgacgaacatgatgttctctgaggatctcttcaacaagagttccacagagtac
aaagccctggagcagaggttcctcgaactgctcatcccttacctgcagtccaacctcagc
aacttccagaacctggagatcctgaatttccgtaacggcagcattgtggtgaacagcagg
atgaagtttgggaagcccgtctctcggggggtcaccaatactgtgtaccttatcctagag
gactttgctaactcagccttccaaaccatgaacctcgccatagacaaatactcactggat
gtggaatcaggcaaccaggcaaacccctgcaagttccaagcgtgtaatgagtattcgatg
tgcacggtgaaccgctggtccggggaggcggagtgtgtgtgtgacgcgggttacttcagc
gtggacggactgccgtgccagagtatctgtgacctgcaggaggacttctgtctcaacgat
gggaagtgtgatgtcatccctggcaagggagccatctgcagatgtcgtgttggagagaat
tggtggtaccgcggtgaacactgtgaggagtatgtgtcagaacctctggtggtgggcatc
gccatagcgtcggtggctggattcctattggtggcctctggggcaatcttcttcctggcc
aggactctgagggacggttatgacaaggaggattcagaggatcctctacgagatcaggac
agtgtgccatccttagagagagccaccaagttcaaccccatgtatgagagtgatgtggcc
acggcagagtactacagacggtacgaagacgacgtgccgcaccacagtacgggcagcgca
gacccctctgtggagttctgcagtgacgagatactccaaatctacgacaactccgagctc
accagagaggtacgtagaggcacacgtgtgtatgagattctattttcaccctga
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