Oncorhynchus nerka (sockeye salmon): 115144685
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Entry
115144685 CDS
T07952
Name
(RefSeq) DNA-binding protein RFX7-like
KO
K09175
DNA-binding protein RFX7
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115144685
Transcription factors [BR:
one03000
]
Eukaryotic type
Other basic domains
RF-X
115144685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFX5_N
RFX_DNA_binding
Pox_D5
DUF3602
Cdc6_C
Motif
Other DBs
NCBI-GeneID:
115144685
NCBI-ProteinID:
XP_029541558
LinkDB
All DBs
Position
LG17:complement(511332..533516)
Genome browser
AA seq
1803 aa
AA seq
DB search
MADDDDQQQPGQLKPNSGLGSLPTLVPGLQGPEANALQYKIKNSICKSVQSKVDNILQDV
EKFTDIEKLYLYLKLPSGPNNGIDKRTENQRASTPGLCDQSGMSSSRTQQMYAFNWIRNH
LEEHPETSLPKQEVYDEYKSYCDSLAYHPLSAADFGKIMKNVFPNMKARRLGMRGKSKYC
YSGLRKKAFVHMPSLPNLDLQKSDDGCELMEPSSGQSPSAEDEMRSAACGLVCEWAQNLA
RFLLNSHYIGTKSMAALTVMTGAPTGLKTPTPTSAFVPTSEASSFQPQVKTLASPSVDAK
QQLQRKIQKKQQEQKLQSPLPGEAQGQNQARRTEASTPGPAIPCGSPALLSPQPTIGIVV
AAVSSPITVQRSRQLMTSPSPVGSAEGKVLPTVNFQVVTHTQSLTHRQSPKTPQNISASP
VGDRLARHRYPQILPKPSATGAITLRSPPTLLITNSPMKTHHVVKMTAISLAPSNTLSTS
SNSMVLRPASAGVGTTTTTTTTFTTIAALEEVQGQSQGGPPAPATPQSPAAWPGAPPSTP
IPTVVPEAIITDNNPGCNSDKRSTIKQSPCGAKGPERATKYRAASEPSLMVKCSPGPDRV
TARTKSVSFSSTSPPAAVTNAAIKWAGPQQDSNKSIIATTCHQESPLYLTVAPSANQNTP
NVSGMSSSSNGSSAVTLLSPKDSSFGVKSPRKRAGPGLDSSHVIPVKRVFISQQPLSVTF
DPKPWVPARPGTPARPESAPCRVTVKQHLVPTKILALSDSPVTNADISSLSSSQAVVSVK
PQVSSLLVVKREDPSSRGLTLSTVSSHTSSTAAPDSTTTTMSEQQHQSEASVSAMAVGAQ
HQSEASVSAMAVGAQHQSEASVSAMAVGAQHQSEASVSAMAVGAQHQSEASVSAMAVGAQ
QQSEASVSAMAVGAQQQSEASVSAMAVGAQQQSEASVSAMAVGAQQQSEASVSVMGDIKS
TMWEESAAGHPEELQKQTFSQNIPADHTKQQALGSTMNQHQLPNIMSQTSDSSDQLSGLH
QEMVDFASSASQHGSTMDYFSFNDDDMTQDSIVEELVQMEEQMKLKGLQPLFSSCVDNIS
LQGQPGGPQGSILNTHHQGDSSSFYQSAHSSTTPIQTPTPTPTPTPTPTPTEMTLGGHGL
TRESPCCHHSMAPITPVEGPLGGRHTPISALSNCSSGIPPSPVECRNPFAFTPINSSMAG
GYHDASVVSVSSSPIKPMQRPMATHPDKAKLEWINNRYNSSGTEATGGVGAGSGSGLSIS
NHSLGGLLPSYQDLVDDHFRKPHAFAVPGHSGQSFQSQSRLQDGEHFSPISPVQQQMTSV
STTPTNTPTKQDERFAVPAPLDNKGGASSSGGGTFRCRSVSPAVRQRTFSGTGTTPGTST
TTQLVVSPFSSPMTSSEILSFLSNSQSVGSNLHSMAQRSQSVPLNIMMQSVVEMELLPVE
MQAIQGQNQSNVNKITNVLLSKMDSGVDDTVRGLGINNFPSNYTARMNLTQMLETQSQSQ
ATNGSFTTGRGGGNTHQSHLQLQTVSSSPASFDLQQHGSYLTSAGGGGGGVSFSSGDNQA
QTGPGENVDLELQQIQGLQELQTQTQLQSQARLLQSPHPQLQGGLQLLQTQTQLQSQTRL
LQSPHPQLQGGLQLLQTQTQLQSQARLLQSPQLQLLQTQSQVLLQPTPTQQQQEDDAQQQ
LDFNNTVKDLLGDDGLNVDAEGLNPSSQLVGQVASELNAAVVSDFTNDIRLTSDLSNSIT
DLNTLDANLLFNPSNQQQEQYEDATLEELKNDPLFQQICSDTVNSSFDWLESKDQPTTVE
MLG
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatgatgatcaacaacaacctggtcagctgaagcccaactcgggattgggc
tctcttccaacgttagtaccaggactacagggccccgaggccaatgcgttgcagtacaaa
ataaagaattcaatttgcaaatctgtacaatcaaaagtggacaacatattgcaagatgtt
gagaagtttacagacatcgagaaactctacctctaccttaagttgccttctggtcccaac
aatggcattgataaaaggactgagaatcagagagcctccactcctggactatgtgaccag
agtggcatgtcgtccagccgaacacagcagatgtacgctttcaactggatccgcaatcac
ctagaggagcaccctgagacatcactgccaaagcaagaggtgtacgacgaatacaagagc
tactgtgacagtcttgcctaccacccactgagtgctgcagactttggaaagatcatgaag
aacgtgtttcccaacatgaaggctcgccgcctgggcatgagaggcaaatctaaatactgt
tatagtggactgaggaagaaagcttttgttcacatgccttctctgcccaacttggactta
caaaaatcagatgacggttgtgagttaatggagccgtcgtcgggccagtctcccagtgcg
gaggatgagatgcgctccgcggcctgtggcttggtgtgtgagtgggctcagaacctggct
cgcttcctgctcaacagtcactacataggaaccaagtctatggctgccctcaccgtcatg
actggggctcccacaggtctaaagacgcccacgccaacctctgcgttcgtgcccacgtcc
gaggcctcgtccttccagccgcaggtgaagacgcttgcctctccctcggtagacgccaag
cagcagctccagaggaagatccagaagaaacagcaggagcagaagctccagtcccccctg
cctggagaggcccagggacagaaccaggccaggaggacagaggccagcaccccagggcca
gctatcccctgtggaagtcctgctctgctctcaccacaacctaccattggtatagtggtg
gcagctgtctccagtcccatcacggtccagaggagcagacagctgatgacttcccctagc
ccagtgggatccgccgaggggaaggtcctgccaacggtcaacttccaggtggtcacccac
acccagtctctgacccacaggcagtcaccgaagactccccaaaacatctcagccagccca
gtgggcgaccgcctggccaggcacaggtacccccagatcctccccaagccctcagccaca
ggggccatcaccctgcgttcgccccccaccctgctcatcacaaacagccctatgaagacc
caccacgttgtcaagatgaccgccatctccctggcccctagcaacactctcagtaccagc
agtaacagtatggtcctcaggccagcctcggccggggtgggaaccaccaccaccaccacc
accacctttaccaccatcgctgccctagaggaggtccagggacagagccagggaggcccc
ccagccccagccaccccccagtcccctgcagcatggcctggcgccccaccctccacccct
attcccacagtggtccctgaggccatcatcactgataataacccgggctgtaactctgat
aaacggagcaccataaagcagtccccctgtggggccaaaggtccagagagagccaccaag
taccgagcggccagcgaaccctcgcttatggtcaaatgctcaccaggacctgacagagtg
accgctaggaccaaaagcgtctcattctcctccacttctcctccagctgctgtcaccaat
gcagcgatcaagtgggcggggcctcagcaggacagcaataagagcatcatcgccaccacc
tgtcatcaagaaagtcctttgtatctgaccgttgctccctcggccaatcaaaatactcct
aacgtcagcggaatgtcctcctcgtccaatggctcgtcggctgttaccttattgtcccct
aaagactcctcgttcggggtcaagagccccaggaagcgggccggccccgggctggattcc
tcccacgtcatccctgtgaagcgcgtcttcatctcccagcagcctttgagtgtgaccttt
gaccccaaaccatgggttccagctagacctggcactccggccagacctgagagtgccccc
tgtcgagtgacggtgaaacaacacctagtgcccacgaagatcctggcgctgtccgactcg
cctgtcacgaacgcagacatctcctccctctcttcctcgcaggctgtcgtcagtgtgaag
ccacaggtctcctcgttgctggtagtgaaacgtgaagacccgtcctctcgaggactaaca
ctaagcactgttagcagtcacaccagcagcactgcagcccctgatagcaccaccaccaca
atgtctgagcagcagcatcaatctgaggcctctgtttctgcgatggcggttggagcacag
catcaatctgaggcctctgtttctgcgatggcggtaggagcacagcatcaatctgaggcc
tctgtttctgcaatggcggtaggagcacagcatcaatctgaggcctctgtttctgcaatg
gcggtaggagcacagcatcaatctgaggcctctgtttctgcaatggcggttggagcacag
caacaatctgaggcctctgtctctgcgatggcggtaggagcacagcaacaatctgaggcc
tctgtctctgcgatggcggttggagcacagcaacaatctgaggcctctgtctctgcgatg
gcggtaggagcacagcaacaatctgaggcctctgtttctgtgatgggggatataaagagc
acaatgtgggaggagtcagctgcggggcacccggaagagctgcagaaacagaccttcagt
cagaatataccagcagaccacaccaagcagcaggccctgggctccaccatgaaccaacac
caactcccaaacatcatgtcccagacctcagactcctctgatcagttatctggccttcac
caggagatggtggactttgcctcctcagcctcccagcacggctccaccatggactacttc
tcctttaacgatgacgatatgacccaggacagcatagtggaggaactggttcagatggaa
gaacagatgaagctgaagggcctccagccgttgttcagtagctgtgtggataatatctct
ctccagggccagccggggggcccccaggggtccatcctcaacactcaccaccagggggat
agttcctctttctaccagtctgcccatagcagcacaacccccatccagactcccaccccg
actcccaccccaactccaaccccgacccccaccgagatgactctcggtgggcacgggctg
accagagagagcccctgttgccatcacagcatggcccctatcacgcccgtggaggggcct
ctaggaggccgacacacccctataagcgctctgtctaactgttctagcggcatcccgccc
agcccggtggagtgcaggaacccgtttgccttcacccctatcaactccagcatggcaggg
ggttaccacgatgcctctgtggtgtctgtctcctccagtcccatcaagcccatgcagaga
cccatggccactcaccctgataaggctaaactggagtggatcaacaaccgctacaacagt
agtggtactgaagctactggaggagtcggagcagggtcaggttccgggttatccatctct
aaccacagccttggtggactcctgcctagttaccaggatctagttgatgaccatttccgt
aagccgcacgccttcgctgttccgggccacagtggccagtctttccagtctcagtccaga
ctgcaggatggcgaacacttctctcccatctccccggtgcaacagcagatgaccagcgtg
tcgaccacgcccaccaacactccaaccaaacaggatgagagatttgctgtgcccgctcct
ttagacaacaagggcggcgcctcatcgtcggggggcgggacgttccgttgccgtagcgtc
agccccgccgtccgccagaggaccttcagcggcaccggcacaacacccggcactagcaca
accactcaattggtcgtctcccctttcagctcccccatgacctcctccgagatactcagc
ttcctgtccaatagccaatcggtgggcagtaacctccacagcatggcccagcgcagccaa
tcggtgcccttaaacatcatgatgcagagcgttgtggagatggagctgcttcctgtagag
atgcaggccatccagggacagaaccagagtaacgtcaataagatcaccaacgtcctcttg
agtaagatggactctggcgtggacgacacagtcaggggcctgggcatcaacaacttcccc
tccaactacactgcccgcatgaacctcacccagatgctggagacccagtctcagagccag
gccaccaatgggagcttcacaaccggaaggggaggaggtaacacccaccaatcccacctt
cagctgcagaccgtcagctccagccctgcctccttcgacctccagcagcatgggagctac
ctcaccagcgctggaggaggcggggggggtgtgagcttctcctctggagacaaccaagca
caaacaggtcctggtgagaatgtggacctggagctccagcagatccagggcctccaagag
ctccagacccagacccagctccaatcccaggctagactgctccagagtccacatccccag
ctccagggtgggctccagcttctccagacccagacccagctccaatcccagactagactg
ctccagagtccccatccccagctccagggtgggctccagcttctccagacccagacccag
ctccaatcccaggctagactgctccagagtccccagctccagcttctccagacccagtcc
caggtactcctccagcccacccccacccagcagcaacaggaggatgatgcccagcaacag
ctagacttcaacaacactgttaaagacctgttaggtgatgacggcctcaacgttgacgct
gaaggcctcaaccccagctctcaactggtcggtcaggtggcgtcagagcttaatgctgcc
gtggtgtccgacttcaccaatgacatcaggttgacctccgacctttccaacagcatcact
gacctgaacacactggacgccaacctcctgttcaatccgtccaatcagcagcaagaacag
tacgaagacgccacactggaagagctgaagaacgatcctctgtttcagcagatatgtagt
gatactgtgaactcctcgttcgactggctagagagcaaagaccagcctactaccgtagag
atgttgggctaa
DBGET
integrated database retrieval system
