Oncorhynchus nerka (sockeye salmon): 115144716
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Entry
115144716 CDS
T07952
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115144716
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115144716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Activator_LAG-3
Motif
Other DBs
NCBI-GeneID:
115144716
NCBI-ProteinID:
XP_029541609
EnsemblRapid:
ENSONEG00000008655
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Position
LG17:complement(2310523..2412705)
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AA seq
609 aa
AA seq
DB search
MERLLSKDWKDRMERLNASKLLGEVKGTPESLEEKERQLSTMIGQLISLREQLLAAHDEQ
KKMAASQMEKQRQQMELARQQQDQIARQQQQLMQQQHKINVLQQQIQVQGHMPPLMIPVF
PHDQRSLAAAAAAAQQGFLFPHNMSYKPGDNYPMQFIPSTMAAAAASGLSPLQLQQLYAT
QLASMQISPGAKMASLPQPPNSSDPLSPPGLKSEKRVLSPVTHVKEEGSTQPLNLSARSK
TGDRSPSSPSHTLFPSNKTSPITMGKGRIPSPLSNMGRGSLDILSSLNSTALFGDQDAVM
KAIQEARKMREQIQREQLHHQQQQSLEAKLTALSGMSLSNGNKERMHFESLSQHLGNLGE
DGKMGHRVIDLTRPEDLHGGASTTEARVFREARGRNSAEPHIKRPMNAFMVWAKDERRKI
LQTFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKNHLEKYPNYKYKPRPKRTCI
IDGKKLRIGEYKQMMRSRRQEMRQFFSVGPQPQIPISNSAGGLYPGAITMATATPSPHLT
SDCSSASASPEPAIPVIQSTFGVVKPEPVAMVTGDHPVNGEHEIDMYEDFEDKSDYSSDH
ETREPVSAN
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggagagacttctgtctaaagactggaaagacaggatggaaagactgaatgccagcaaa
ctcctaggagaggtcaaaggtaccccagagagtttggaggagaaggagcggcagctgtcc
accatgatcggccagcttatcagcctgcgggagcagctcctggcggcccacgacgagcag
aagaagatggctgcgtcacagatggagaaacagaggcagcaaatggagctggcccgccag
cagcaggaccagattgcgaggcaacagcagcagctcatgcagcagcagcacaagatcaac
gttctccagcagcagatacaggtgcagggtcacatgcctcctctgatgatcccagtgttt
cctcatgaccagcgatctctggctgctgccgccgctgctgcacagcagggcttcctcttc
ccacacaacatgtcctacaaaccaggtgataactaccccatgcagttcattccatccaca
atggcagctgcagccgcgtcaggactgagcccgctacaactacagcagctgtacgccacc
cagctggccagcatgcagatctcacctggagccaaaatggcctcactgccacagcctccc
aactcctcagaccccctatcgccccccggcttaaagagtgagaagagagtgttgagtcct
gtcactcatgttaaggaggaagggtcaacgcagcccctgaacctctcagcccgatccaag
actggcgaccgctccccgtcctcgccctcacacaccctgttccccagcaacaagaccagc
cccatcaccatggggaaggggcgcatccccagccctctctccaacatgggcagaggctca
ctggacatcctatccagtctgaactccacagcgttgtttggggaccaggacgcagtgatg
aaggccatccaggaggcgaggaagatgagggagcagatccagagagaacagcttcatcat
cagcagcagcagagcctggaggccaagctcacagccctgagcggcatgagcctcagcaat
ggcaacaaggagcggatgcactttgagagtttgagtcagcacctgggcaacctgggagag
gatggaaagatgggccacagggtcattgacctcaccagacctgaggatcttcatggtggt
gccagcactacggaagcacgggtcttcagggaggccaggggcaggaacagtgccgagccc
cacatcaagaggcccatgaatgccttcatggtgtgggccaaggacgagaggaggaagatc
ctgcagaccttccccgacatgcataactccaacatcagcaagatcctgggctctcgctgg
aagtccatgagcaaccaggagaagcagccatactatgaggaacaggcccgtctcagtaag
aaccatctggagaagtaccccaactacaagtacaagccccggcccaagaggacctgcatc
atcgacgggaagaagctgcgcatcggggagtacaagcagatgatgcgctcgcggcgacag
gagatgaggcagttcttcagtgtggggccacagcctcagatccccatcagcaacagcgct
ggaggcctctacccgggcgccatcaccatggcgacagccacgccttcaccgcacctaaca
tcagactgctccagtgcatcggccagccccgagcccgcaattcctgtcatccagagcacg
ttcggcgtggtcaagccagagccggttgccatggtgaccggtgaccacccagtcaacggg
gagcacgagatagacatgtacgaagactttgaggataaatcggactacagcagcgaccac
gagacacgggagcctgtcagtgccaactaa
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