Oncorhynchus nerka (sockeye salmon): 115144819
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Entry
115144819 CDS
T07952
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3-like isoform X1
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115144819
Enzymes [BR:
one01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115144819
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115144819
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
zf-C3HC4
zf-RING_UBOX
Beta-prop_THOC3
Beta-prop_WDR5
WDR55
WD40_CDC20-Fz
zf-RING_5
zf-rbx1
Beta-prop_EML_2
zf-C3HC4_3
zf-C3HC4_2
EIF3I
zf-C3HC4_4
zf-RING_11
Beta-prop_WDR3_1st
zf-RING_Vps41
Beta-prop_WDR3_2nd
CFAP43_N
Beta-prop_WDR75_1st
zf-ANAPC11
Rtf2
WD40_Prp19
Beta-prop_RIG_2nd
Zn_ribbon_TiaS
WD40_WDHD1_1st
Beta-prop_EML
WD40_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
DUF6779
zf-UDP
Motif
Other DBs
NCBI-GeneID:
115144819
NCBI-ProteinID:
XP_029541759
LinkDB
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Position
LG17:complement(6132801..6158808)
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AA seq
715 aa
AA seq
DB search
MEAMEVDLQLGVPRREPEPDAMAGNVEPSIIIPDSGSETEVEDEVDAAPLDPPRLPTTWA
FSQNRIRVEGQVGPRIRMEGHILHRVTTAAVRRQRRARPGVRALYPTQTSLSASRFLDFL
LRVPAANPDSGNTTESSESEDEADPTGPVDPHNPDEPAVPSSPGMNPPVAATPLQGPNPS
DSNATTEAVRTETGNQVNPESVTAPVATSGAALRSSQGDEGEGETCSICFEPWTTSGEHR
LATLRCGHLFGYTCISRWVKGQGQGAKCPQCNKKAKRSDIVLLYARKLRALDNTEQENMK
RSLEQEQSMRRNAELESAQCRLQLQVMTDECGKLRKQIQELKTLMAQPGCRPSKNSGASL
SGLSQRQDSTQGGHYVFSKAVLVSQAGGCRVLSYCEPLSCLLASHPSPHTTLVPGYGVKK
VSTVNLKACQYVPIHVKQIRGLAFNRQADSLLLSAALDNTIKLTSLMTNTVVQTYNTGKP
VWSCCWCLDNNNYVYAGLSNGSVLLYDTRDTSTHVQELQPLRSRCPVASLSYVPRASSSS
FPCGGLIAGSLEGACFWEQVDGTTYRPHILPLETGGCTDIQVEPESRHCLVTYRPGRSNP
SLRCVLMELNRTLQQDAAQEPLCSCYPVQTFSAGSSCKVLTKNAVFRSPAGEGSTLVCAG
DESTNSTMVWDAGSGSLIQKLPADLPVLDICPFEVNQGSYLASLTEKMLKIYKWE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgatggaggtggacttgcagctgggggtccccaggagggaaccagaaccagat
gctatggcaggcaatgtagagccctctatcatcatccctgactctggcagcgaaactgag
gttgaggacgaggtagacgcggctcccctagacccaccacggctcccgaccacctgggcg
ttcagtcagaaccgaatcagagtggagggtcaagttgggcccaggatcagaatggagggt
catattttgcacagggtcactacagcagcagtccggaggcagcggagagccaggccaggc
gtcagggcgctctaccccacccagacctctctctctgctagtcgcttcctagatttcctg
ctgcgagtccctgcagccaaccctgactctggcaataccacagagtcgagcgagtcggag
gatgaggcagaccccacagggccagtagaccctcacaaccctgacgaacctgctgttccc
tccagccctggaatgaaccctcctgtggcagccacgccactgcaaggcccaaatccttca
gattctaatgcaaccacagaggctgtgaggacagagactggaaatcaagtgaatcctgag
agtgtaacagccccagtggccaccagtggtgcggctcttcggtcgtcccaaggggatgag
ggggagggggagacctgctctatctgctttgagccctggaccacgtcaggggagcaccga
ctggccaccctgcgctgcggacatctcttcggctacacctgcattagccgctgggtgaag
ggccagggccagggagccaagtgtccccagtgcaacaagaaggccaagcgctctgatatc
gtcctcctgtatgcacgcaagctgagggctttggacaacacagagcaggagaatatgaag
aggtcattggagcaggagcagtcaatgcgtaggaatgctgaactagagtcagcccagtgc
cggctacaactgcaggtgatgacagacgaatgtgggaaactacgcaagcagatacaggag
ttgaagacgctgatggctcagcctggctgtaggccttctaagaactcaggggcctctctc
tctgggctctcacagagacaggacagcacccaggggggccactacgtcttctccaaggcc
gtgctagtgtcccaggcggggggctgcagggtgctgtcctactgtgaacccctcagctgc
ctgctggcctcccatccctccccacacaccacactggtgcccggctatggtgtgaagaag
gtgagtacggtgaatctgaaggcatgccagtatgttcccatccatgttaaacagatcaga
ggcctggcattcaacagacaagctgacagcctcctgctctctgctgccctggacaacacc
atcaaactcaccagtctaatgaccaacacagtggtgcagacatacaacacgggtaagcca
gtgtggagctgttgctggtgcctggacaacaacaactacgtgtacgctggtctcagtaac
ggctctgtgctgctgtatgataccagagacaccagcacacatgtccaggagctgcagcca
ctacgctctaggtgtcccgtggcctcactgtcctacgtgcctcgcgcctcctccagctcg
ttcccgtgcggcggcctcatcgcaggttctctggagggggcctgcttctgggagcaggtg
gacggcaccacttacagaccccacattttgcccctggagacaggaggctgcacagacatc
caggtggagccagagagcagacactgtctggtcacctacagaccagggcgctccaacccg
tctctgcgttgtgttctgatggagctgaacaggactctacagcaggatgcggcccaggag
cccttgtgttcctgctaccctgtccagaccttcagcgccggctcctcatgcaaagtgctc
accaagaacgctgtgttcagaagcccagccggggagggctccactttggtctgtgccggg
gacgagtccactaactccaccatggtgtgggatgcagggagtggatccctgattcagaag
ttgcctgctgacctcccagtgttggacatctgcccgtttgaggtgaatcagggcagttac
ctggcctcgctcactgagaagatgctcaaaatctacaagtgggaataa
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