Oncorhynchus nerka (sockeye salmon): 115144829
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Entry
115144829 CDS
T07952
Symbol
cnot2
Name
(RefSeq) CCR4-NOT transcription complex subunit 2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115144829 (cnot2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115144829 (cnot2)
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115144829 (cnot2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
115144829 (cnot2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
115144829
NCBI-ProteinID:
XP_029541780
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Position
LG17:complement(6359805..6368201)
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AA seq
522 aa
AA seq
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MFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDMLSSPSPSSSGQLSQLGASLYGP
QSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITPTTGVPTMSLHTPPSPSRGILPMNSRN
MLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPPSIICMPKQQPARQPFTINSMSGFGMN
RNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRREGSANPTPLLNPLAGRAP
YVGMVTKPSNEPTQDFSIHNEDFPALPGPNYKDPTLSNDDSKTNLNSTGKSTSSADGPKF
PGDKTSSAQNNSQKKGIQVLPDGRVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLAL
GSDLTTLGLNLNSPENLYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLAR
YGEDLLFYLYYMNGGDLLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGT
YYFFDCLNWRKVAKEFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtggaaagtgactaccctgatgag
aacatgtactacagccagccgtccatgtacccacatcggtcggacaaagacatgctctcg
tctccctcaccgtcatcatcaggtcaactatcccagcttggggccagtttatatggccca
cagagtgcactaggcttctcgataaggggcatgggcaacaacacgcctcagttaaaccgc
agcttaacgcaaggcactccactaccgagccatatcacccccaccactggggtacccacc
atgtccctccataccccaccctcgccaagcagggggatcctgccgatgaactcgaggaac
atgctgaaccactcccaggtgggccagggcatcgggatgggcggcggcaggaccaacagc
atgggcagctcagggctgggcagccccaaccgcagcccccccagcattatctgtatgccc
aaacagcagcctgcacggcagcccttcaccatcaacagcatgtcgggatttgggatgaac
cggaaccaggcgtttgggatgaacaactcgttatcaagcaacatcttcaatggcacagac
ggcagtgaaaacgtgacggggctagacctgtctgacttccctgcgttagcagacaggagt
cggagggaaggaagcgcaaacccaacaccgctactcaacccactagctggaagggccccc
tatgttggcatggtgacgaagccatcgaacgagccgacgcaggatttctccatccacaac
gaggactttcctgcactgcctggtcccaactacaaggaccccacgttgagcaacgatgac
agcaaaacaaacctaaactctacaggcaagagcacgtccagtgcagacggtcctaagttc
cccggagacaagacgagctcagcacagaacaacagccagaagaaagggatccaggtgtta
cctgacgggcgggtgacgaacattcccgggggaatggtgacggaccagtttgggatgatt
ggcttgctgacgtttatccgagcagcggagacggacccgggcatggtgcacttggcactg
gggagtgacctcacaacgcttggactcaacctcaactctccagaaaacctgtaccccaag
tttgcctccccctgggcatcagcaccgtgtcgacctcaagacattgacttccacgtcccc
tctgagtacttaaccaacatccacataagggacaagctggcagctattaaactggcgcgg
tacggtgaagacctgctgttctatctgtactacatgaacggaggagacctgctacagctc
ctggcagcagtagagctctttaaccgggattggcggtaccacaaagaggagcgggtgtgg
atcacgcgggcgccgggcatggagcccacactaaagaccaacacctatgagagggggacc
tactacttctttgattgtcttaactggaggaaggtagccaaggagttccacctggagtac
gaaaagctagaagagaggccccacgtcccatctaccttcaactacaacccagctcagcag
gccttctga
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